BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951005
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62340.1 | Symbols: | Plant invertase/pectin methylesterase... 850 0.0
AT5G62330.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 446 2e-124
> AT5G62340.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:25033518-25034404 FORWARD
LENGTH=887
Length=887
Score = 850 bits (460), Expect = 0.0
Identities = 590/653 (90%), Gaps = 8/653 (1%)
Strand=Plus/Plus
Query 17 AGCAATGGCAAAACAATACCAAGCTCTCTTTCTACTCCTCTCCGTCTCCTACCTCTTCTC 76
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 81 AGCAATGGCAAAACAATACCAAGCTCTCTTTCTACTCTTCTCCGTCTTCTACCTCTTCTC 140
Query 77 CTCAGAGCTCACGACCGCCACAATCAGCCCGACTGGAACTTCCACAAAAGCACTAAACTT 136
|| | |||||||||||||||| ||| |||| | |||||| |||||||||||||||||||
Sbjct 141 GTCGGTGCTCACGACCGCCACAGTCAACCCGGCCGGAACTACCACAAAAGCACTAAACTT 200
Query 137 CATTCAATCCTCATGCAAATCCACAACGTACCAATCCCTATGCGTTGAAACTCTCTCGGT 196
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 201 TATTCAATCCTCATGCAAATCCACAACATACCAATCCCTGTGCGTTGAAACTCTCTCGGT 260
Query 197 CTACGCCAATACGATCAAAACAAGCCCTCGACGCCTCTTGGATGCAGCTATTGCCGTGAG 256
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 261 TTACGCCAATACGATCAAAACAAGCCCTCGACACCTCTTGGATGCAGCTATCACCGTGAG 320
Query 257 TCTGAACCAAGCGCTGTCCACGAAGCTCTTCATCTCACACCTGAGGAAGAGTCC-GTTCC 315
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 321 TCTGAACCAAGCGCTGTCCACGAAGCTCTTCATCTCACACCTGAGGAAGAG-CCAGTTCC 379
Query 316 AAACCCTTCAGGACTGTGCACCATCGACCGATACGTTCAATACAGATTGCCAGTGTTCTA 375
||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct 380 AAATCCTTCAGGACTGCGCACCATCGACCGATACGTTCAGTACAGATTGCGAGTGTTCTG 439
Query 376 TCGAAG-AGCTCCAAGAGGTGGAGAATTGTAACGGTTGGACCGAATGCTTGTCTAAAATA 434
|| ||| | ||||||||||||| |||||||||| |||||||||| ||||||| | | ||
Sbjct 440 TCCAAGCA-CTCCAAGAGGTGGTGAATTGTAACAGTTGGACCGACTGCTTGTTTCACGTA 498
Query 435 AACAATGCTGAAGTGTGTGCCATTGCGGGTGAGAGTCATAGCGTTGAGAACACTTGCTCC 494
|| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 499 AAGAATGCTGAAGTGTGTGCCATTTCGGGTGAGAGTCATAGCGTCGAGAACACTTGCTCC 558
Query 495 AGCCCGTTCGCGGGTCCGGTAAAGATGTCAGTTCAGGGTC-GGATCTCGGATGCGGTAAG 553
||||||||||||| ||||| |||||| |||| ||||| | ||||||||||||| |||||
Sbjct 559 AGCCCGTTCGCGGATCCGGGAAAGATATCAGC-CAGGGGCCGGATCTCGGATGCCGTAAG 617
Query 554 AAAGTCACTCCAGACCCGATTCGCTAAGTTGCACCAAGAAATAAACAATGCCAAGCTGTT 613
||| ||||| || ||||| ||| ||||||||| ||| ||||||||||||||||| ||||
Sbjct 618 AAAATCACTTCATACCCGGTTCTCTAAGTTGCGCCAGGAAATAAACAATGCCAAAATGTT 677
Query 614 GTTCAAAGCCTTTCCGAATAATCATAAGTAATAAGAC-TT-CTTTTGTTGTAT 664
|||| | |||||||| ||||| ||| |||||||| | || ||||||||||||
Sbjct 678 GTTCGAGGCCTTTCCTAATAAGCATTAGTAATAATATATTTCTTTTGTTGTAT 730
> AT5G62330.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Plant invertase/pectin methylesterase inhibitor superfamily
protein (TAIR:AT5G62340.1); Has 9 Blast hits to 9 proteins
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr5:25031601-25032204 FORWARD LENGTH=513
Length=513
Score = 446 bits (241), Expect = 2e-124
Identities = 331/373 (89%), Gaps = 12/373 (3%)
Strand=Plus/Plus
Query 36 CAAGCTCTCTTTCTACTCCTCTCCGTCTCCTACCTCTTCTCCTCAGAGCTCACGACCGCC 95
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 5 CAAGCTCTCTTTCTACTCCTCTCCGTCTCCTACCTCTTCTCCTCAGACCTCACGGCTGCC 64
Query 96 ACAATCAGCC-CGACTGGAACTTCCACAAAAGCACTAAACTTCATTCAATCCTCATGCAA 154
|| ||| || || | |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 65 ACCGTCA-CCGCGGCCGGAACTTCTACAAAAGCACTAAACTTCATTCAATCTTCTTGCAA 123
Query 155 A-TCCACAACGTACCAATCCCTATGCGTTGAAACTCTCTCGGTCTACGCCAATACGATCA 213
| | ||||||||||||||||| ||||| || || |||||||||||||| |||||||||
Sbjct 124 AGTT-ACAACGTACCAATCCCTGTGCGTGGACACGCTCTCGGTCTACGCAAATACGATCC 182
Query 214 AAACAAGCCCTCGACGCCTCTTGGATGCAGCTATTGCCGTGAGTCTGAACCAAGCGCTGT 273
|||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct 183 AAACAAGCCCTCGACGCCTCGTGGATGCAGCTATCGCCGTGAGTCTGAAACAAGCGCTGT 242
Query 274 CCACGAAGCTCTTCATCTCACACCTGAGGAAGAGTCC-GTTCCAAACCCTT-CAGGACTG 331
|||||||||||||||||||||||||||||||||| || ||||||||||||| ||| ||||
Sbjct 243 CCACGAAGCTCTTCATCTCACACCTGAGGAAGAG-CCAGTTCCAAACCCTTGCAG-ACTG 300
Query 332 T-GCACCATCGACCGATACGTTCAATACAGATTGC-CAGTGTTCTATCGAAGAGCTCCAA 389
| |||| | ||||| || | || ||||||| || ||||||||| ||||||| ||||||
Sbjct 301 CCG-ACCAACAACCGAAACATACACTACAGAT-GCGCAGTGTTCTGTCGAAGAACTCCAA 358
Query 390 GAGGTGGAGAATT 402
||||||| |||||
Sbjct 359 GAGGTGGTGAATT 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099619933
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5