BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951014
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structura... 243 2e-63
> AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural
maintenance of chromosomes 2 | chr5:25056262-25062625 FORWARD
LENGTH=3763
Length=3763
Score = 243 bits (131), Expect = 2e-63
Identities = 152/162 (94%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 47 CCTTACAGAAGATTCATGATGAATCTCTTGCCGAGCTCAAGTTGATACATGCAAGGATGA 106
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 2628 CCTTACAGAAGATTCATGATGAGTCTCTTGCCGAGCTCAAGTTGATACATGCAAAGATGA 2687
Query 107 GGGAATGCGATACACATG-TAAGTGGTTTTGTCACTGAGCAGGAAAAATGTCTGCAGAAG 165
|||||| |||||||| | ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2688 AGGAATGTGATACACA-GATAAGTGGTTTTGTCACTGACCAGGAAAAGTGTCTGCAGAAG 2746
Query 166 CTTAGTTACATGAAGCTTGAAAGAAAGAAATTGGAAAATGAG 207
|||||| ||||||||||||| |||||||||||||||||||||
Sbjct 2747 CTTAGTGACATGAAGCTTGAGAGAAAGAAATTGGAAAATGAG 2788
Score = 172 bits (93), Expect = 3e-42
Identities = 100/103 (97%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 291 CTTGGAAAAAAGAGTGAACAAGAAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGAATA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2974 CTTGGAAAAAAGAGTGAACAAGAAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGAATA 3033
Query 351 CAATGCTCTGATATCGAAGAAAAATACTATCGAGAAAGA-AAA 392
|||||||||||||||||| ||||||||||||||||| || |||
Sbjct 3034 CAATGCTCTGATATCGAAAAAAAATACTATCGAGAATGACAAA 3076
Score = 108 bits (58), Expect = 9e-23
Identities = 84/95 (88%), Gaps = 8/95 (8%)
Strand=Plus/Plus
Query 384 GAAAGAAA-AGTTAACAAGAAAGGTTATTGCTATGTTTGAGAAAGCAGAAGATGAATACA 442
|||| ||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 2978 GAAA-AAAGAGTGAACAAG-AAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGAATACA 3035
Query 443 ATGCTCTGGTATC-AAAGAAAAATTACCTA-CGAG 475
|||||||| |||| ||| |||||| || || ||||
Sbjct 3036 ATGCTCTGATATCGAAA-AAAAAT-AC-TATCGAG 3067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5