BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951020
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62430.1 | Symbols: CDF1 | cycling DOF factor 1 | chr5:25069... 1314 0.0
AT1G26790.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 145 9e-34
> AT5G62430.1 | Symbols: CDF1 | cycling DOF factor 1 | chr5:25069093-25070934
REVERSE LENGTH=1249
Length=1249
Score = 1314 bits (711), Expect = 0.0
Identities = 843/903 (93%), Gaps = 23/903 (3%)
Strand=Plus/Plus
Query 9 AAGCTCTTTGGTATGAAAATTCCTTTCCCGACGGTTTTAGAGGTTACTACTGATgaagaa 68
||||||||||||||||||||||||||||||||||||||||||| | | ||||| |||
Sbjct 175 AAGCTCTTTGGTATGAAAATTCCTTTCCCGACGGTTTTAGAGG-T--TGCTGAT---GAA 228
Query 69 gaagaagaaaagaaCCAAAACGAGACGTTAACTGATCAATCGGAGAAAGACAAAACCCTT 128
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 229 GAAGAAGAAAAGAACCAAAACAAGACATTAACTGATCAATCGGAGAAAGACAAAACCCTA 288
Query 129 AAGAAACCAACCAAGATTCTTCCATGTCCAAGATGCAACAGCATGGAGACAAAATTCTGT 188
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 289 AAGAAACCAACCAAGATTCTTCCATGTCCAAGATGCAACAGCATGGAGACTAAGTTCTGT 348
Query 189 TACTACAACAACTACAACGTAAACCAACCTCGCCATTTTTGTAAAGCCTGTCAGAGATAT 248
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 349 TACTACAACAACTACAACGTAAACCAACCTCGCCATTTTTGTAAAGCTTGTCAGAGATAT 408
Query 249 TGGACCTCTGGTGGGACCATGAGAAGTGTTCCCATCGGAGCAGGACGACGCAAGAACAAG 308
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 409 TGGACCTCAGGTGGGACCATGAGAAGTGTTCCAATCGGAGCAGGACGGCGCAAGAACAAG 468
Query 309 AACAACTCATCGTCATCAACTTCACATTACCACCACGTGACTATCTCCGAAACAAATGGT 368
||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 469 AACAACTCA----C--CAACTTCACATTACCACCATGTGACTATCTCCGAAACAAATGGT 522
Query 369 CCGGTCCTTAGTTTCAGCCTCGGAGATGATCAAAAGGTCTCGAGTAATAGGTTCGGGAAT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 523 CCGGTCCTTAGTTTCAGCCTCGGAGATGATCAAAAGGTCTCGAGTAATAGGTTTGGTAAT 582
Query 429 CCAAAGCTAGTGGCTAGGATAGAGAACAATGACGAGCGCTCAAATAACAACACTTCGAAC 488
| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 583 CAAAAGCTAGTTGCTAGGATAGAGAACAATGACGAGCGCTCTAATAACAACACTTCGAAC 642
Query 489 --T--GC-TT-T---CCAGGAGTTTCGTGGCCGTACACGTGGAATCCTGCGTTTTACCCG 539
| | || | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GGTTTGAATTGTTTTCCGGGAGTTTCGTGGCCGTACACGTGGAATCCTGCGTTTTACCCG 702
Query 540 GTTTACCCTTACTGGAACATTCCAATGTTGTCTTCTCCGGTTAA-TTCAAGTCCTACTTC 598
||||||||||| |||| ||| ||| |||||||||||||||| || |||||||||||||||
Sbjct 703 GTTTACCCTTATTGGAGCATGCCAGTGTTGTCTTCTCCGGT-AAGTTCAAGTCCTACTTC 761
Query 599 TACTCTTGGTAAGCATTCGAGGGACGAAGACGAAACGGTGAAGCAAAAACAGAGGAACGT 658
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 762 TACTCTTGGTAAGCATTCGAGAGACGAAGACGAGACGGTGAAGCAAAAACAGAGGAATGG 821
Query 659 ATCTGTATTGGTTCCTAAGACTTTAAGAATTGATGATCCTAATGAAGCTGCAAAGAGTTC 718
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 822 ATCTGTATTGGTTCCAAAGACTTTGAGAATTGATGATCCTAATGAAGCTGCAAAGAGTTC 881
Query 719 TATATGGACAACACTTGGTATCAAGAACGAAGTTATGTTCAATGGGTTTGCTTCGAAGAA 778
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 882 GATATGGACAACACTTGGGATCAAGAACGAAGTTATGTTCAATGGGTTTGGTTCGAAGAA 941
Query 779 AGAGGTTAAGATTAATAACAAAGAAGAAACAGAGACTTCTCTTGTTCTTTGTGCAAACCC 838
|||||||||| | | ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 942 AGAGGTTAAGCTCAGTAACAAAGAAGAAACAGAGACCTCACTTGTTCTTTGTGCAAACCC 1001
Query 839 TGCTGCGTTATCAAGATCAATCAATTTTCATGAGCAGATGTGATTGTATACATATGATAT 898
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1002 TGCTGCGTTATCAAGATCAATCAATTTCCATGAGCAGATGTGATTGTATACATATGATAT 1061
Query 899 ATA 901
|||
Sbjct 1062 ATA 1064
> AT1G26790.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:9273857-9275312 REVERSE LENGTH=1191
Length=1191
Score = 145 bits (78), Expect = 9e-34
Identities = 153/187 (82%), Gaps = 14/187 (7%)
Strand=Plus/Plus
Query 129 AAGAAACCA-ACCAAGATTCTTCCATGTCCAAGATGCAACAGCATGGAGACA--AAATTC 185
||||||||| | |||||||||||||||||| |||||||||||| | ||||| ||||||
Sbjct 385 AAGAAACCAGA-CAAGATTCTTCCATGTCCGAGATGCAACAGC--GCAGACACCAAATTC 441
Query 186 TGTTACTACAACAACTACAACGTAAACCAACCTCGCCATTTTTGTA-AAGCCTGTCAGAG 244
||||||||||||||||||||||| ||||| || || || || |||| || || |||||
Sbjct 442 TGTTACTACAACAACTACAACGTTAACCAGCCACGTCACTTCTGTAGAAAA-TGCCAGAG 500
Query 245 ATATTGGACCTCTGGTGGGA-CCATGAGAAGT-GTTCCCA-TCGGAGCAGGACGACGCAA 301
||||||||| ||||||| | ||||||| | | || ||| | || |||| || |||||
Sbjct 501 GTATTGGACCGCTGGTGG-ATCCATGAGGA-TCGT-CCCGGTTGGCTCAGGCCGTCGCAA 557
Query 302 GAACAAG 308
|||||||
Sbjct 558 GAACAAG 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5