BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951023

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61560.1 | Symbols: MLO6, ATMLO6 | Seven transmembrane MLO f...   350    7e-96


> AT1G61560.1 | Symbols: MLO6, ATMLO6 | Seven transmembrane MLO 
family protein | chr1:22708697-22712044 REVERSE LENGTH=1942
Length=1942

 Score =  350 bits (189),  Expect = 7e-96
 Identities = 283/325 (87%), Gaps = 19/325 (6%)
 Strand=Plus/Plus

Query  23    ATGGGTTCAAAGATGAAACCAACATTGTTCAACGAGAGAGTAGCAACAACATTAAAGAGT  82
             |||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct  1318  ATGGGTTCAAAGATGAAACCAACAGTGTTCAACGAGAGAGTAGCAACAGCGTTAAAGAGT  1377

Query  83    TGGCATCACACATC-AATGAAACAGATCAATTATGAAACATGGAAGAACTTCAGAATCAA  141
             |||||||||||| | || |||| | || | | |  || ||||||||||||||||||||||
Sbjct  1378  TGGCATCACACAGCTAA-GAAA-A-AT-A-TCA--AA-CATGGAAGAACTTCAGAATCAA  1429

Query  142   -A-C-C-TTTCTCTAGCCGACCAACAACACCAACACATGGTTCTTCTCCGATTCATCTCC  197
              | | | |||||||||  |||||||||||||||| |||||||||||||||||||||||||
Sbjct  1430  CAACACCTTTCTCTAGTAGACCAACAACACCAACTCATGGTTCTTCTCCGATTCATCTCC  1489

Query  198   TTCACAATG-TCCCTCACAAACGAAGCAGAAGCATCGATGATAGCTTCGTGA-TTCGATG  255
             |||  |||| ||| ||||||||||||||||||| | || || ||||| | || |||| | 
Sbjct  1490  TTCGTAATGCTCC-TCACAAACGAAGCAGAAGCGTTGACGAAAGCTTTGCGAATTCGTTT  1548

Query  256   TCTCCGAGAAGAAACTCTGATTTCGATTCATGGGATCATGAATCTCAACACGAAACTGCT  315
             |||||||||| |  ||||||||||||||| ||||||| ||| |||||||| |||||||||
Sbjct  1549  TCTCCGAGAA-A--CTCTGATTTCGATTCGTGGGATCCTGAGTCTCAACATGAAACTGCT  1605

Query  316   GAGACTTCGAATTCAAATCATCGTT  340
             |||||||||||||| ||||||||||
Sbjct  1606  GAGACTTCGAATTCGAATCATCGTT  1630



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5