BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951033 Length=494 Score E Sequences producing significant alignments: (Bits) Value AT5G62540.1 | Symbols: UBC3 | ubiquitin-conjugating enzyme 3 | ... 798 0.0 > AT5G62540.1 | Symbols: UBC3 | ubiquitin-conjugating enzyme 3 | chr5:25103934-25105619 FORWARD LENGTH=877 Length=877 Score = 798 bits (432), Expect = 0.0 Identities = 471/489 (96%), Gaps = 5/489 (1%) Strand=Plus/Plus Query 9 TTTCCAACAGCAATGACAACTCCAGCAAGAAAGAGACTGATGTGGGATTTCAAGAGACTG 68 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 259 TTTCCAACAGCAATGACAACTCCAGCAAAAAAGAGACTGATGTGGGATTTCAAGAGACTG 318 Query 69 CAGAAAGATCCTCCTGTGGGAATTAGTGGAGCTCCACAAGATAACAATATCATGCATTGG 128 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 319 CAGAAAGATCCTCCTGTGGGAATAAGTGGAGCTCCACAAGATAACAATATCATGCATTGG 378 Query 129 AATGCTGTCATCTTTGGACCTGATGACACTCCATGGGATGGAGGTACTTTCAAGTTGACT 188 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 379 AATGCTCTCATCTTTGGACCTGAGGACACTCCATGGGATGGAGGTACTTTCAAGTTGACT 438 Query 189 CTTCAGTTCACCGAGGATTACCCGAACAAACCCCCTATTGTTCGGTTTGTTTCACGGATG 248 ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 439 CTTCACTTCACCGAGGATTATCCGAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATG 498 Query 249 TTTCATCCAAACATTTATGCTGATGGAAGCATTTGCTTGGATATCTTACAAAACCAGTGG 308 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 499 TTTCATCCAAACATTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGG 558 Query 309 AGTCCCATCTATGACGTTGCTGCAGTTCTCACATCAATTCAGTCTTTGCTTTGTGACCCA 368 || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 559 AGCCCCATCTACGACGTTGCTGCAGTTCTCACATCAATTCAGTCTTTGCTCTGTGACCCA 618 Query 369 AACCCTGATTCACCAGCGAACGCAGAGGCTGCAAGGTTGTTCAGTGAGAATAAACGAGAA 428 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 619 AACCCTGACTCACCAGCGAACGCAGAGGCTGCAAGGTTGTTCAGTGAGAATAAAAGAGAA 678 Query 429 TATAACAGGAAAGTAAGT-GAGATCGTGGAGCAGAGCTATGTATAA-TATGATTCCATTT 486 |||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |||| Sbjct 679 TATAACAGGAAAGTAA-TCGAGATCGTGGAGCAGAGCTATGTATAAATATGATTC-ATTT 736 Query 487 -GTTGTATT 494 |||||||| Sbjct 737 TGTTGTATT 745 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23559814943 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5