BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951033
Length=494
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62540.1 | Symbols: UBC3 | ubiquitin-conjugating enzyme 3 | ... 798 0.0
> AT5G62540.1 | Symbols: UBC3 | ubiquitin-conjugating enzyme 3
| chr5:25103934-25105619 FORWARD LENGTH=877
Length=877
Score = 798 bits (432), Expect = 0.0
Identities = 471/489 (96%), Gaps = 5/489 (1%)
Strand=Plus/Plus
Query 9 TTTCCAACAGCAATGACAACTCCAGCAAGAAAGAGACTGATGTGGGATTTCAAGAGACTG 68
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 259 TTTCCAACAGCAATGACAACTCCAGCAAAAAAGAGACTGATGTGGGATTTCAAGAGACTG 318
Query 69 CAGAAAGATCCTCCTGTGGGAATTAGTGGAGCTCCACAAGATAACAATATCATGCATTGG 128
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 319 CAGAAAGATCCTCCTGTGGGAATAAGTGGAGCTCCACAAGATAACAATATCATGCATTGG 378
Query 129 AATGCTGTCATCTTTGGACCTGATGACACTCCATGGGATGGAGGTACTTTCAAGTTGACT 188
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 379 AATGCTCTCATCTTTGGACCTGAGGACACTCCATGGGATGGAGGTACTTTCAAGTTGACT 438
Query 189 CTTCAGTTCACCGAGGATTACCCGAACAAACCCCCTATTGTTCGGTTTGTTTCACGGATG 248
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 439 CTTCACTTCACCGAGGATTATCCGAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATG 498
Query 249 TTTCATCCAAACATTTATGCTGATGGAAGCATTTGCTTGGATATCTTACAAAACCAGTGG 308
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 499 TTTCATCCAAACATTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGG 558
Query 309 AGTCCCATCTATGACGTTGCTGCAGTTCTCACATCAATTCAGTCTTTGCTTTGTGACCCA 368
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 559 AGCCCCATCTACGACGTTGCTGCAGTTCTCACATCAATTCAGTCTTTGCTCTGTGACCCA 618
Query 369 AACCCTGATTCACCAGCGAACGCAGAGGCTGCAAGGTTGTTCAGTGAGAATAAACGAGAA 428
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 619 AACCCTGACTCACCAGCGAACGCAGAGGCTGCAAGGTTGTTCAGTGAGAATAAAAGAGAA 678
Query 429 TATAACAGGAAAGTAAGT-GAGATCGTGGAGCAGAGCTATGTATAA-TATGATTCCATTT 486
|||||||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||
Sbjct 679 TATAACAGGAAAGTAA-TCGAGATCGTGGAGCAGAGCTATGTATAAATATGATTC-ATTT 736
Query 487 -GTTGTATT 494
||||||||
Sbjct 737 TGTTGTATT 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23559814943
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5