BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951043
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15480.1 | Symbols: | C2H2-type zinc finger family protein ... 429 2e-119
> AT5G15480.1 | Symbols: | C2H2-type zinc finger family protein
| chr5:5025952-5027160 REVERSE LENGTH=1209
Length=1209
Score = 429 bits (232), Expect = 2e-119
Identities = 323/366 (88%), Gaps = 10/366 (3%)
Strand=Plus/Plus
Query 358 AGAAACCGCGAAAAGGTGGTGAATTTGAATATGGGGTTTTCAGTGATGAGCAAAGATTTA 417
|||||||| |||||||||||||||| |||| ||||||||| ||| ||||||||||| |||
Sbjct 563 AGAAACCGAGAAAAGGTGGTGAATTGGAATCTGGGGTTTTAAGTAATGAGCAAAGACTTA 622
Query 418 TGGAAGAAAGGTTTAGTAGTTATGGAACATCGAAAGAACCAGCTAGCTTCTTGAGAGATG 477
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 623 TGGAAGAAGGGTTTAGTAGTTATGGAACATCGAAAGAACCAGCTAGCTTCTTGAGAGACG 682
Query 478 ATAACAGATTGGATCAGCAGAAACGAAGAAAAGCTGGTGAATTTGAATCTGGGTTTTTGA 537
| ||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||
Sbjct 683 AAAACAGATTGGATCAGCAGAAACGGAGAAAAGATGGTGAATTTGAATCCGGACTTTTGA 742
Query 538 GTAATGAGCAAAGAATGCTAAAAGAAGAGATTACTACTCCTGTTACATTCAAAGGTCCAG 597
|||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 743 GTAATGAGCAAAGACTGCTAGAAGAAGAGATTACTACTCCTGTGACATTCAAAGGTCCAG 802
Query 598 CAAGTTTCTTGGGATACAAGTGTGTTTTGGATCAGCAGAAGCTGCGAAATGGAGGTGAAT 657
| |||| |||| || ||||||||| |||||||| | | || || || || | || |
Sbjct 803 CGAGTTCCTTGAGACACAAGTGTGCTTTGGATC-G-A-AA--TG-GAGGTGAATTTGG-T 855
Query 658 T-TG-GTTCTTTGAGTAATGAGCAAAAACTGATGGAAGGGACATGGAAAGAACCAGCGAG 715
|| ||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct 856 CCTGAGTT-TTTGAGTAATGAGCAAACACTGATGGAAGAAACATGGAAAGAACCAGTGAG 914
Query 716 TTTCTT 721
||||||
Sbjct 915 TTTCTT 920
Score = 370 bits (200), Expect = 1e-101
Identities = 310/361 (86%), Gaps = 16/361 (4%)
Strand=Plus/Plus
Query 1 CCCTGGAATCTCCGGAACTAATGAAGAAGATTTTGTTTCGATGCGAAGAATGTGGAAAAG 60
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CCCAGGAATCTCCGGAACCAATGAAGAAGATTTTGTTTCGATGCGAAGAATGTGGAAAAG 214
Query 61 GGTTTCGGTACGAGAAATGTTTTTCA-AATCATCGAGCGACGATGCATTTATCGACGAAC 119
|||||||||||||||||| |||| | |||||||| ||| ||||||||||||| |||||
Sbjct 215 GGTTTCGGTACGAGAAATATTTTA-AGAATCATCGCTCGATGATGCATTTATCGCCGAAC 273
Query 120 CAGAAGGTTTATGAAGAATCCATGATGACTCTGTGTCGTATC-TTCAGTTTTGTGAGGAA 178
||||||||| |||||||||| |||||||||||| ||||| | || |||| |||| |||
Sbjct 274 GAGAAGGTTTGTGAAGAATCCTTGATGACTCTGTCTCGTAGCCTTGGGTTT-GTGAAGAA 332
Query 179 GAAGAAAAGATCGAGACTTGTTAGGTATAAGAAGACTTCATTTTCTTGTTCGTATAGTAC 238
|||||||||||| ||||||| ||||| | |||||||| |||| || ||| | | |
Sbjct 333 GAAGAAAAGATCAAGACTTGGTAGGTCTGGGAAGACTTTATTTACTA---CGT-T--T-C 385
Query 239 ATTTCTTGAACCGCGTTCTGTTTTTGATGCGAATGATGAAGAATTAGAAGTGGCGGATTG 298
|| |||||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 386 -TT----GAACCGAGTTCTATTTTTGATGCGACTGATGAAGAATTAGAAGTGGCGGATTG 440
Query 299 TTTGATTCTATTGTCTGAGAGTACTCCCAAGTTTGTAGACGGACTGAAACTTCTTGCTGA 358
|||||||||||||||| ||||| |||||||| ||||||||| | ||||| |||| ||||
Sbjct 441 TTTGATTCTATTGTCTAAGAGTGCTCCCAAGGTTGTAGACGAATTGAAAAGTCTTTCTGA 500
Query 359 G 359
|
Sbjct 501 G 501
Score = 198 bits (107), Expect = 7e-50
Identities = 179/210 (85%), Gaps = 20/210 (10%)
Strand=Plus/Plus
Query 743 ACA-AACTGAGCTTGGAGTAGGAGCTATGGAGTGTTCTGATTCAGATACTGAGATGATCA 801
||| || |||||||||||||||||||||||||||| || |||||||||||| ||| |||
Sbjct 986 ACAGAATTGAGCTTGGAGTAGGAGCTATGGAGTGTACTTCTTCAGATACTGATATGCTCA 1045
Query 802 CTG-AATCTGATAAGAAGAACGTTGAGCATCAATGCAGGTTTTGCAACAAGATATAT-TC 859
| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||
Sbjct 1046 C-GCAATCTGATAAGAAGAACGTTGAGCATCGATGCAGGTTGTGCAACAAGATAT-TCTC 1103
Query 860 GTCTTATCAAGCATC-AGG-----A---G--GT--CATCGGATGAGCAAATGTAAGAACA 906
|||||||||||| || ||| | | || |||||||||||||||||||||||||
Sbjct 1104 GTCTTATCAAGC-TCTAGGGGGTCATCAGACGTTTCATCGGATGAGCAAATGTAAGAACA 1162
Query 907 AGAAGAATTTCAGAGAGGAATCAGT-GAAC 935
|||||||| || |||||||||||| ||||
Sbjct 1163 AGAAGAATGGCATAGAGGAATCAGTTGAAC 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48827590884
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5