BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951049
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62510.1 | Symbols: | F-box family protein | chr5:25095373-... 804 0.0
AT5G62660.1 | Symbols: | F-box and associated interaction doma... 361 6e-99
AT5G62940.1 | Symbols: HCA2, DOF5.6 | Dof-type zinc finger DNA-... 93.5 2e-18
> AT5G62510.1 | Symbols: | F-box family protein | chr5:25095373-25096635
REVERSE LENGTH=1263
Length=1263
Score = 804 bits (435), Expect = 0.0
Identities = 511/548 (93%), Gaps = 3/548 (1%)
Strand=Plus/Plus
Query 92 ACAAAGCGTAACCTTACCCGCCATCAAATTCAACATCTTTGTTCAAGGAAATGATCATAG 151
||| |||||||||||||||||||||||||||||||| ||||| |||||||| || |||||
Sbjct 498 ACAGAGCGTAACCTTACCCGCCATCAAATTCAACATTTTTGTCCAAGGAAACGAACATAG 557
Query 152 TGTCCTCTACTTCTTGGGACACGATCCTGTTCTTGATCAATACAAAGTAGTTTGTAATTT 211
| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 558 TCTCCTCTACTTCTTGGGGCACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTTT 617
Query 212 TGTGTCATCATCTTCACAAGATTTGGACATGATAAACTTGGAGCATTGGGTCTTTGTACT 271
|||||||||||| |||||||||||||| | ||||| || ||||||||||||||| |||||
Sbjct 618 TGTGTCATCATCCTCACAAGATTTGGAAACGATAATCTCGGAGCATTGGGTCTTCGTACT 677
Query 272 AGAAGTTGGAGATTCTTGGAAAAGAATAGAGTTTGATCAACCTCATATAT-CTACAAGAC 330
|||||||||| ||||||||||||||| ||||||||||||||||||| | |||| |||
Sbjct 678 GGAAGTTGGAGGTTCTTGGAAAAGAATTGAGTTTGATCAACCTCATA-CTCCTACGAGAT 736
Query 331 CTGGACTGTGCATCGGTGGAGTTATATATTATCTTGCTTTCACTAGTATGTTTGAGGATA 390
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 737 CTGGACTGTGCATCGGTGGAGTTATATATTATCTTGCTTTCACTAGTATGTTTCAGGATA 796
Query 391 TCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAATCCAAGCGCCTCTTGTGG 450
||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 797 TCGTTGTCACCTTTGACGTTAGGTCTGAAGAATTTAACATTATCCAAGCGCCTCTTGTGT 856
Query 451 TGTCTGCATATGTTGGCTCTCTGGGTTTTATAGAGTATGGTGGGAAACCAGCTATTTTTT 510
||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 857 TGTCTGCATATGTTGACTCTCTGGATTTTATAGAGTACGGTGGGAAACCAGCTATTTTTT 916
Query 511 ATCATACTAGTCTTAAAGAAAACGGTTTGGTGGACTTATGGGTCTTGGAAAATGCTGGAA 570
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 917 ATCATACTAGTCTTAAAGAAAACGGTTTGGTAGACTTATGGGTCTTGGAAAATGCTGGAA 976
Query 571 ACTGGTCGAGGAAAGCTTTGAGTTTGCAGCCTTCTCAGCTGC-TTTAGTTGATAACGACA 629
|||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 977 ACTGGTCGAGGACAGTTTTGAGTTTGCAGCCTTGTCAGCTGCATTTAGTTGATAACGACA 1036
Query 630 TTCTATTG 637
||| ||||
Sbjct 1037 TTCCATTG 1044
> AT5G62660.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:25156326-25157465 REVERSE LENGTH=1140
Length=1140
Score = 361 bits (195), Expect = 6e-99
Identities = 442/557 (79%), Gaps = 33/557 (6%)
Strand=Plus/Plus
Query 92 ACAAAGCGTAACCTTACCCGCCATCAAATTCAACATCTTTGTTCAAGGAAAT--GA-T-- 146
|||||| ||||||||||| || |||||| ||||||| ||| |||| |||| | |
Sbjct 492 ACAAAGTGTAACCTTACCTGCTGTCAAATCCAACATCCTTGCTCAA--AAATCCCACTGG 549
Query 147 CATAGTGTCCTCTACTTCTTGGGACACGATCCTGTTCTTGATCAATACAAAGTAGTTTGT 206
||||| |||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 550 AATAGTCTCCTCTACTTTTTCGGATACGATCCTGTTCTTGATCAATACAAAGTAGTTTGC 609
Query 207 AATTTTGTGTCATCAT-CTTCACAA-GATTTGGACATGATAAACTTGGAGCATTGGGTCT 264
| | ||| | | || || || || | || | | ||||| || |||||||||||||
Sbjct 610 ACTGTTGCA-C-T-ATTCT-CAAAAAGGCTTA-AGAGGATAACCTCAGAGCATTGGGTCT 664
Query 265 TTGTACTAGAAGTTGGAGATTCTTGGAAAAGAATAGAGTTTGATCAACCTCATATATCTA 324
| ||||||||| |||| ||| ||||||||||| || || |||||||||||| | |||
Sbjct 665 TCGTACTAGAACCAGGAGGTTCGTGGAAAAGAATTGAATTCGATCAACCTCATCTCCCTA 724
Query 325 CAAGACCT-GGACTGTGCATCGGTGGAGTTATATATTATCTTG-CTTTCACTAGTATGTT 382
| |||| | ||| ||||| || |||||||||||||||| ||| ||| |||| | | |
Sbjct 725 CGAGAC-TAGGATTGTGCGTCAATGGAGTTATATATTAT-TTGGCTTCCACTTGGAAGCG 782
Query 383 T-GAGGATATCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAATCCAAGCG- 440
| | | ||||||||||||| ||||||||| | |||||||| || | || ||||||| |
Sbjct 783 TCGTG-ATATCGTTGTCAGTTTTGACGTTCGGTCTGAAGAGTTCAGTATGATCCAAG-GA 840
Query 441 CCTCTTGTGGTGTCTGCATATGT-TG-GCTCTCTGGGTTTTATAGAGTATGGTGGGAAAC 498
|||||| ||||||||||| | | || | ||| |||| ||||||||||||||||| ||||
Sbjct 841 CCTCTTAAGGTGTCTGCATTT-TCTGAG-TCTGTGGGATTTATAGAGTATGGTGGAAAAC 898
Query 499 CAGCTATTTTTTATCATACTAGTCTT-AAAGAAAACGG-TTTGGTGGACTTATGGGTCTT 556
||||| ||||| || |||| | | | ||| ||| ||| |||||||||||| ||||||||
Sbjct 899 CAGCTGTTTTTGATTATACCA-TGATGAAACAAA-CGGGTTTGGTGGACTTGTGGGTCTT 956
Query 557 GGAAAATGCTGGAAACTGGTCGAGGAAAGCTTTGAGTTT-GCAGCCTTCTCAGCTGC-TT 614
|||| |||||||||| ||||| |||||| || || |||| |||||||| |||| ||| ||
Sbjct 957 GGAAGATGCTGGAAAATGGTCAAGGAAATCTCTG-GTTTTGCAGCCTTGTCAGATGCATT 1015
Query 615 TAGTTGATAACGACATT 631
|||| ||||| ||||||
Sbjct 1016 TAGTCGATAATGACATT 1032
> AT5G62940.1 | Symbols: HCA2, DOF5.6 | Dof-type zinc finger DNA-binding
family protein | chr5:25256919-25258681 REVERSE LENGTH=1560
Length=1560
Score = 93.5 bits (50), Expect = 2e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 13 AACACCCAATGGGTCTCACTTCTCTTCAAGTTTGCATGGATTCTGATTGGCTCCAG 68
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 AACACAAAATGGGTCTCACTTCTCTTCAAGTTTGCATGGATTCTGATTGGCTCCAG 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30743297964
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5