BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951054

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G62510.1 | Symbols:  | F-box family protein | chr5:25095373-...   396    1e-109


> AT5G62510.1 | Symbols:  | F-box family protein | chr5:25095373-25096635 
REVERSE LENGTH=1263
Length=1263

 Score =  396 bits (214),  Expect = 1e-109
 Identities = 307/350 (88%), Gaps = 14/350 (4%)
 Strand=Plus/Plus

Query  1    gaagaagaggtcttcaaaggcgatgacgagaagaggaacg-cgaagaaaaagaagaagac  59
            |||||||||||||||||||||||| | ||||||||||| |   ||||| |||||||||||
Sbjct  39   GAAGAAGAGGTCTTCAAAGGCGATTATGAGAAGAGGAA-GAAAAAGAAGAAGAAGAAGAC  97

Query  60   aaagaGGAGACGA---TTTTGTAGCGCCGGAGATTACTTTGGATCTCCAGATCGAGATTC  116
            |||||||||| ||   |||||| || ||||||||| |||||||||| | |||||||||||
Sbjct  98   AAAGAGGAGAAGATTTTTTTGTGGCACCGGAGATTCCTTTGGATCTACTGATCGAGATTC  157

Query  117  TGACTAGATTGCCTGC-CAAATCGCTGATGAGGTTCAAGTGCGTCTCAAAGCTA-TGGTC  174
            |||||||||||||| |  |||||||| ||||||||||||||||| ||||||| | |||||
Sbjct  158  TGACTAGATTGCCT-CATAAATCGCTTATGAGGTTCAAGTGCGTTTCAAAGC-AGTGGTC  215

Query  175  TTCTCTTATCCTTTCCCGATATTTTAGCAACTGTTATCTTACGGTTGCATCTCCACTGCG  234
            ||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct  216  TTCTCTTATCCGTTCCCGATTTTTTAGCAACCGTTATCTTACGGTTGCATCTCCACTGCG  275

Query  235  ACCACCACCTCGTCTATACATGACTTTGGTGGACCACGAGTGT-AGTTCAACGGAGGTCT  293
            ||||| |  |||||||||||| | ||||||||||||| ||||| | ||||| ||||||||
Sbjct  276  ACCAC-A--TCGTCTATACATTAGTTTGGTGGACCACAAGTGTGA-TTCAAGGGAGGTCT  331

Query  294  GCCACAACCCCCATGAGTCTGCACTGCTATCATTATCATCATCGTCTAGT  343
            |||||| |||||  ||||||| |||||||||||| |||||  | ||||||
Sbjct  332  GCCACAGCCCCCGCGAGTCTGTACTGCTATCATTCTCATCGCCTTCTAGT  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5