BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951058
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62710.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2772 0.0
> AT5G62710.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:25187303-25190600 FORWARD LENGTH=2225
Length=2225
Score = 2772 bits (1501), Expect = 0.0
Identities = 1732/1845 (94%), Gaps = 9/1845 (0%)
Strand=Plus/Plus
Query 10 TGGAATCAGTGAAATGGGTATCTC-AATTTGGGTTTTCTCAGTAATTTCTGCAGCTACCC 68
|||||||||||||||||||||||| || |||||||||||| |||||||||| ||||||||
Sbjct 123 TGGAATCAGTGAAATGGGTATCTCGAA-TTGGGTTTTCTCTGTAATTTCTGTAGCTACCC 181
Query 69 TTTTCGTTTCGTGCTCCTCCGCTCTCACTCCTGATGGATTTGCTCTTTTGGAATTGAAGA 128
|||| || || ||||||| |||||||||| ||||||||||||||| |||||||||||||
Sbjct 182 TTTTTGTCTCCTGCTCCTTTGCTCTCACTCTTGATGGATTTGCTCTATTGGAATTGAAGA 241
Query 129 GTGGATTCAATGATACGAGGAACTCTTTAGAGAACTGGAAAGATTCAGATGAGTCTCCTT 188
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 242 GTGGATTTAATGATACGAGGAACTCACTAGAGAACTGGAAAGATTCAGATGAGTCTCCTT 301
Query 189 GTTCTTGGACTGGTGTCTCCTGTAATCCTCAAGACCAGAGAGTCGTCTCTATAAACTTAC 248
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 302 GTTCTTGGACTGGTGTCTCCTGTAATCCTCAAGACCAAAGAGTTGTTTCTATAAACTTAC 361
Query 249 CATACATGCAACTAGGAGGGATAATATCTCCTAGCATTGGAAAACTTAGTCGATTGCAGA 308
|||| |||||| |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 362 CATATATGCAATTAGGAGGGATAATATCTCCTAGCATTGGGAAGCTTAGTCGATTGCAGA 421
Query 309 GACTGGCACTTCATCAGAACAGCTTACGCGGGATA-ATCCCTAATGAAATCACCAATTGC 367
||||||||||||||||||| ||||||| |||| | || ||||||||||||||||| |||
Sbjct 422 GACTGGCACTTCATCAGAATAGCTTACATGGGA-ACATTCCTAATGAAATCACCAACTGC 480
Query 368 ACTGAGCTCAGAGCCATGTATTTGAGAGCAAATTTTCTTCAAGGAGGGATTCCACCGGAT 427
|||||||| ||||| ||||| ||||| || |||||||| ||||| |||||||||||||||
Sbjct 481 ACTGAGCTAAGAGCTATGTACTTGAGGGCGAATTTTCTCCAAGGCGGGATTCCACCGGAT 540
Query 428 CTCGGCAACCTTACATTTCTTACGATATTGGATCTATCAAGCAATACACTGAAGGGTGCT 487
| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 541 TTAGGCAACCTTACATTTCTTACTATATTGGATCTATCAAGCAATACACTCAAGGGTGCT 600
Query 488 ATTCCTTCTTCAATTAGTCGATTGACGCGATTACGCTCCTTGAACTTGTCAACCAACTTT 547
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 ATTCCTTCTTCAATTAGTCGATTGACGCGGTTACGCTCCTTGAACTTGTCAACCAACTTT 660
Query 548 TTCTCTGGCGAGATCCCGGATATTGGAGTTCTCAGCAGATTTGGGGTCGAAACATTT-AC 606
|||||||| || || |||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 661 TTCTCTGGTGAAATACCGGATATTGGAGTTCTCAGCAGATTCGGGGTCGAAAC-TTTCAC 719
Query 607 CGGTAATTTGGATCTTTGTGGCCGGCAAATTCGCAAGCCATGTAGATCATCGATGGGTTT 666
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 TGGTAATTTGGATCTCTGTGGCCGGCAAATTCGCAAGCCATGTAGATCATCAATGGGTTT 779
Query 667 CCCTGTTGTTCTTCCTCATGCAGAAACTGATGATGAATCAGATCCTCCAAAGCGGTCATC 726
|||||||||||||||||||||||||| || ||||||||||||| |||||||||| |||||
Sbjct 780 CCCTGTTGTTCTTCCTCATGCAGAAAGTGCTGATGAATCAGATTCTCCAAAGCGATCATC 839
Query 727 GCGGTTAATTAAAGGAATTTTGATTGGAGCAATGTCTACAATGGCTCTTGCATTCATTGT 786
|| || ||||||||||| ||||| || ||||||||||||||||||||||||||||| ||
Sbjct 840 ACGCTTGATTAAAGGAATCTTGATCGGCGCAATGTCTACAATGGCTCTTGCATTCATCGT 899
Query 787 GATCTTTGTATTCCTATGGATTTGGATGCTCTCAAAGAAGGAAAGAACAGTAAAGAAGTA 846
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 900 GATCTTTGTTTTCCTATGGATTTGGATGCTCTCAAAGAAGGAAAGAAAAGTAAAGAAGTA 959
Query 847 CACAGAAGTCAAGAAACAAAAGGATCCATCCGAAACAAGTAAAAAGCTTATTACTTTCCA 906
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 960 CACAGAAGTCAAGAAACAAAAGGATCCATCCGAAACAAGTAAAAAGCTGATTACTTTCCA 1019
Query 907 TGGCGATCTTCCATACTCCTCGACTGAGCTGATCGAGAAGCTAGAGTCTCTTGACGAGGA 966
||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 TGGTGATCTTCCATACTCTTCAACTGAGCTGATTGAGAAGCTAGAGTCTCTTGACGAGGA 1079
Query 967 AGACATTGTGGGTTCGGGAGGATTTGGCACTGTTTATCGAATGGTAATGAATGATCTTGG 1026
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1080 AGACATTGTGGGTTCGGGAGGATTTGGCACGGTTTATCGAATGGTTATGAACGATCTTGG 1139
Query 1027 AACCTTTGCGGTTAAGAAGATAGATAGAAGTCGAGAAGGATCAGACCGAGTTTTTGAGCG 1086
||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1140 AACCTTTGCGGTTAAAAAGATAGATAGGAGTCGACAAGGATCAGACCGAGTTTTTGAGCG 1199
Query 1087 AGAGGTAGAGATTTTGGGTAGTGTCAAACACATCAATCTAGTGAACCTCCGTGGATACTG 1146
||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 AGAAGTAGAGATTTTAGGTAGTGTCAAACACATCAATCTAGTGAACCTACGTGGATACTG 1259
Query 1147 CCGCTTACCGTCTTCAAGACTTCTCATCTATGATTATCTAACCTTAGGAAGCTTAGACGA 1206
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CCGTTTACCATCTTCAAGACTTCTCATCTATGATTATCTAACCTTAGGAAGCTTAGACGA 1319
Query 1207 TCTTCTCCACGAACGAGCTCAAGAAGACGGTTTGTTGAATTGGAATGCTCGGCTGAGAAT 1266
|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| |||
Sbjct 1320 TCTTCTTCACGAACGAGCTCAAGAAGACGGTTTGTTGAACTGGAATGCTCGGTTGAAAAT 1379
Query 1267 AGCGCTAGGTTCCGCGAGGGGTCTAGCGTA-CTTGCACCATGATTGTAGTCCCAAAATAG 1325
||||||||||||||||||||||| || || || ||||||||||||||||||||||| |
Sbjct 1380 TGCGCTAGGTTCCGCGAGGGGTCTTGCTTATCTA-CACCATGATTGTAGTCCCAAAATTG 1438
Query 1326 TTCACCGTGACATAAAATCGAGCAATATTCTACTCAATGATAAACTGGAACCTCGAGTCT 1385
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1439 TTCACCGTGACATAAAATCGAGCAATATTCTACTCAATGATAAACTAGAACCTCGAGTCT 1498
Query 1386 CGGACTTTGGTCTTGCAAAGCTTCTTGTGGACGAAGATGCTCATGTTACCACTGTGGTAG 1445
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1499 CGGACTTTGGTCTTGCAAAGCTTCTTGTTGACGAAGATGCTCATGTTACCACCGTGGTAG 1558
Query 1446 CTGGCACCTTTGGCTATCTTGCTCCAGAGTATCTGCAAAATGGGAGAGCAACAGAGAAAT 1505
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 1559 CTGGCACCTTTGGCTATCTTGCTCCAGAGTATCTGCAAAATGGGAGAGCGACGGAGAAGT 1618
Query 1506 CTGATGTATACAGCTTTGGAGTTCTTCTCCTTGAGCTCGTTACAGGAAAAAGACCAACAG 1565
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1619 CTGATGTGTACAGCTTTGGAGTTCTTCTCCTTGAGCTCGTTACCGGAAAAAGACCAACAG 1678
Query 1566 ACCCGATATTCGTCAAAAGAGGCTTGAATGTCGTCGGATGGATGAACACTGTGTTGAAGG 1625
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1679 ACCCGATATTCGTTAAAAGAGGCTTGAACGTCGTCGGATGGATGAACACTGTGTTGAAAG 1738
Query 1626 AGAATCGATTAGAGGATGTAATAGACAAGAGATGCACCGATGTAGACGAAGACTCGGTTG 1685
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1739 AGAATCGATTAGAGGATGTAATAGACAAGAGATGCACCGATGTCGACGAAGAGTCTGTTG 1798
Query 1686 AGGCATTGCTCGAGATAGCGGCCAGATGTACGGATGCGAACCCAGAGGACAGGCCGGCTA 1745
||||||||||||||||||| | |||||||| ||||| ||||| ||| ||||||||||||
Sbjct 1799 AGGCATTGCTCGAGATAGCTGAGAGATGTACAGATGCTAACCCGGAGAACAGGCCGGCTA 1858
Query 1746 TGAACCAGGTGGCTCAGTTGCTTGAGCAAGAAGTCATGTCGCCTTCTTCTGGTATCGATT 1805
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1859 TGAACCAGGTGGCTCAGTTGCTTGAGCAAGAAGTCATGTCACCTTCTTCTGGTATCGATT 1918
Query 1806 ACTACGATGATTCTCATTCCGATTACTGTTAGGG-CTTATGCACG 1849
||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1919 ACTACGATGATTCTCATTCTGATTACTGTTAGGGACTTATGCACG 1963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91917197895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5