BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951066
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62790.2 | Symbols: DXR | 1-deoxy-D-xylulose 5-phosphate red... 1799 0.0
> AT5G62790.2 | Symbols: DXR | 1-deoxy-D-xylulose 5-phosphate reductoisomerase
| chr5:25214257-25217421 REVERSE LENGTH=1727
Length=1727
Score = 1799 bits (974), Expect = 0.0
Identities = 1044/1079 (97%), Gaps = 0/1079 (0%)
Strand=Plus/Plus
Query 393 AGGAGATTTAAGCCTGCGTTGGTTGCTGTTAGAAACGAGTCATTGATCAATGAGCTTAAA 452
||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct 568 AGGAGATTTAAGCCTGCATTGGTTGCTGTTAGAAACGAGTCACTGATTAATGAGCTTAAA 627
Query 453 GAGGCTTTAGCGGATCTGGACTATAAACCCGAGATAATTCCAGGGGAGCAAGGAGTGATT 512
||||||||||| ||| |||||||||||| |||||| |||||||| |||||||||||||||
Sbjct 628 GAGGCTTTAGCTGATTTGGACTATAAACTCGAGATTATTCCAGGAGAGCAAGGAGTGATT 687
Query 513 GAGGTTGCCCGACACCCTGAAGCTGTAACTGTTGTTACCGGAATAGTAGGTTGTGCGGGA 572
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 688 GAGGTTGCCCGACATCCTGAAGCTGTAACCGTTGTTACCGGAATAGTAGGTTGTGCGGGA 747
Query 573 CTTAAGCCTACGGTTGCTGCAATTGAAGCAGGAAAAGACATTGCTCTTGCAAACAAAGAG 632
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 748 CTAAAGCCTACGGTTGCTGCAATTGAAGCAGGAAAGGACATTGCTCTTGCAAACAAAGAG 807
Query 633 ACATTAATCGCAGGTGGTCCTTTCGTGCTTCCGCTTGCCAACAAACATAATGTTAAGATT 692
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 808 ACATTAATCGCAGGTGGTCCTTTCGTGCTTCCGCTTGCCAACAAACATAATGTAAAGATT 867
Query 693 CTTCCGGCAGATTCAGAACATTCTGCCATATTTCAGTGTATTCAAGGTTTGCCTGAAGGT 752
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 CTTCCGGCAGATTCAGAACATTCTGCCATATTTCAGTGTATTCAAGGTTTGCCTGAAGGC 927
Query 753 GCTCTACGCAAGATAATCTTGACTGCATCTGGTGGAGCTTTTAGGGATTGGCCTGTTGAA 812
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 928 GCTCTGCGCAAGATAATCTTGACTGCATCTGGTGGAGCTTTTAGGGATTGGCCTGTCGAA 987
Query 813 AAGCTCAAGGAAGTTAAGGTAGCGGATGCGTTGAAGCATCCAAACTGGAACATGGGAAAG 872
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 AAGCTAAAGGAAGTTAAAGTAGCGGATGCGTTGAAGCATCCAAACTGGAACATGGGAAAG 1047
Query 873 AAAATCACTGTGGACTCAGCTACGCTTTTCAATAAGGGTCTTGAGGTCATCGAAGCTCAT 932
||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 1048 AAAATCACTGTGGACTCTGCTACGCTTTTCAACAAGGGTCTTGAGGTCATTGAAGCGCAT 1107
Query 933 TATTTGTTTGGAGCTGAGTATGACGATATAGAGATTGTCATTCATCCTCAAAGTATCATA 992
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1108 TATTTGTTTGGAGCTGAGTATGACGATATAGAGATTGTCATTCATCCGCAAAGTATCATA 1167
Query 993 CACTCCATGATCGAAACACAGGATTCATCTGTGCTTGCTCAATTGGGTTGGCCTGATATG 1052
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 CATTCCATGATTGAAACACAGGATTCATCTGTGCTTGCTCAATTGGGTTGGCCTGATATG 1227
Query 1053 CGTTTACCGATCCTCTACACCATGTCATGGCCTGATAGAGTTCCTTGTTCTGAAGTAACT 1112
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1228 CGTTTACCGATTCTCTACACCATGTCATGGCCCGATAGAGTTCCTTGTTCTGAAGTAACT 1287
Query 1113 TGGCCAAGACTAGACCTTTGCAAACTCGGTTCATTGACTTTCAAGAAACCAGACAATGTG 1172
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TGGCCAAGACTTGACCTTTGCAAACTCGGTTCATTGACTTTCAAGAAACCAGACAATGTG 1347
Query 1173 AAATACCCATCCATGGATCTTGCTTATGCTGCTGGACGAGCTGGAGGCACAATGACTGGA 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 AAATACCCATCCATGGATCTTGCTTATGCTGCTGGACGAGCTGGAGGCACAATGACTGGA 1407
Query 1233 GTTCTCAGCGCCGCCAATGAGAAAGCCGTTGAAATGTTCATTGATGAAAAGATAAGCTAT 1292
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1408 GTTCTCAGCGCCGCCAATGAGAAAGCTGTTGAAATGTTCATTGATGAAAAGATAAGCTAT 1467
Query 1293 TTAGATATCTTCAAGGTTGTGGAATTAACATGCGATAAACATCGAAACGAGTTGGTAACA 1352
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 TTGGATATCTTCAAGGTTGTGGAATTAACATGCGATAAACATCGAAACGAGTTGGTAACA 1527
Query 1353 TCACCGTCTCTTGAAGAGATTGTTCACTATGACTTGTGGGCGCGTGAATATGCCGCGAAT 1412
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1528 TCACCGTCTCTTGAAGAGATTGTTCACTATGACTTGTGGGCACGTGAATATGCCGCGAAT 1587
Query 1413 GTGCAGCTTTCTTCTGGTGCGAGGCCAGTCCATGCCTGACGAATTGGTTGTTGGAAGAA 1471
|||||||||||||||||||| |||||||| ||||| ||| |||||||||||||||||||
Sbjct 1588 GTGCAGCTTTCTTCTGGTGCTAGGCCAGTTCATGCATGAAGAATTGGTTGTTGGAAGAA 1646
Score = 628 bits (340), Expect = 3e-179
Identities = 378/395 (96%), Gaps = 7/395 (2%)
Strand=Plus/Plus
Query 1 ATTCGATTTTTAAAAGA--CTGATGATGACATTAAACTCACTATCTCCAGCTGAATCCAA 58
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 108 ATTCGATTTTTAAAAGACTCTGATGATGACATTAAACTCACTATCTCCAGCTGAATCCAA 167
Query 59 AGCTTTTTCTTTCTTTGATACCTCCAGGTTCAATCCAATCCCTCAAA-TCTCAGGTGGGT 117
|||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 168 AGCTATTTCTTTCTTGGATACCTCCAGGTTCAATCCAATCCCT-AAACTCTCAGGTGGGT 226
Query 118 TTAGTTTGAGGAGGAGGAATCAAGGGAGAGATTTTGGAAAAGGTGTGAAGTGTTCAGTGA 177
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 227 TTAGTTTGAGGAGGAGGAATCAAGGGAGAGGTTTTGGAAAAGGTGTTAAGTGTTCAGTGA 286
Query 178 AAGTG--G-AGCAGCAGCAACCTCCTCCAGCATGGCCTGGGAGAGCTGTTCCTGAGGCGC 234
||||| | |||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 287 AAGTGCAGCAGCAACAACAACCTCCTCCAGCATGGCCTGGGAGAGCTGTCCCTGAGGCGC 346
Query 235 CTCGTCAATCTTGGGATGGACCTAAACCCATCTCTATTGTTGGATCTACTGGTTCTATTG 294
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 347 CTCGTCAATCTTGGGATGGACCAAAACCCATCTCTATCGTTGGATCTACTGGTTCTATTG 406
Query 295 GCACTCAGACATTGGATATTGTGGCTGAGAATCCTGACAAATTTAGAGTTGTGGCTCTAG 354
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 407 GCACTCAGACATTGGATATTGTGGCTGAGAATCCTGACAAATTCAGAGTTGTGGCTCTAG 466
Query 355 CTGCTGGTTCGAATGTTACTCTACTTGCTGATCAG 389
|||||||||||||||||||||||||||||||||||
Sbjct 467 CTGCTGGTTCGAATGTTACTCTACTTGCTGATCAG 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72539787525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5