BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951069
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62820.1 | Symbols: | Uncharacterised protein family (UPF04... 1500 0.0
> AT5G62820.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr5:25223727-25225021 REVERSE LENGTH=1118
Length=1118
Score = 1500 bits (812), Expect = 0.0
Identities = 889/927 (96%), Gaps = 1/927 (0%)
Strand=Plus/Plus
Query 1 CGCCGGAG-AAATCGAATCAAATAGATGAAGATGAAGCGGACTGCGTCATCGAACTCAGA 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 99 CGCCGGAGAAAATCGAATCAAATAGATGAAGATGAAGCGGACTGCGTCATCGAACTCGGA 158
Query 60 AGCATATAGTTACAACGAATCACCACACTCTCCTCTTCGATTTCATTCTCCGTTATCAGA 119
|||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 159 AGCACAGAGTTACAACGAATCACCTCACTCTCCTCTTCGATTTCATTCTCCGTTATCAGA 218
Query 120 TGCCGGAGATTTACCGGAGAGTCGTTACGTTTCGCCTGAGGGATCTCCGTTCAAAATCGA 179
||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct 219 TGCCGGAGATTTACCTGAAAGCCGTTACGTTTCTCCTGAGGGATCTCCGTTCAAAATCGA 278
Query 180 GAATCCTAAGTCGATCGTAGCTGGTAATAAGCTCACGCAGTTTTCGCCTCTTCCTTCCCC 239
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 279 GAATCCGAAGTCGATCGTAGCTGGTAATAAGCTCACACAGTTTTCGCCTCTTCCCTCGCC 338
Query 240 GATTCCGCCTCCTCCTCCCCAGTTTCCGCCGCCGCGACGTCAGAGGAACGCGAGAGTTCC 299
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 339 GATTCCGCCTCCTCCTCCTCAGTTTCCGCCGCCGCGGCGTCAGAGGAATGCGAGAGTTCC 398
Query 300 GATGAATTCGTCTTCGGATAAGTCTCCGTCGTCTATGGTGGTGCACAATAGCTGGGTGAG 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 GATGAATTCTTCTTCGGATAAGTCTCCGTCGTCTATGGTGGTGCACAATAGCTGGGTGAG 458
Query 360 AGAAGATGGTCAACAAAATACGACGAGGAAAGCTGGAGCTCCGATGAACGGAGAAGAATC 419
|||||| ||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 459 AGAAGACGGTGGACAAACTACGACGAGAAAAGCTGGAGCTCCGATAAACGGAGAAGAATC 518
Query 420 GGCGACGACGACGGTGAGCAGAGCGAGAAGAGACGATTTAGTGAGTGTGACAGCGCTAGG 479
| ||| ||||||||||| |||||||||| ||||||||||||| ||| |||| ||||||||
Sbjct 519 GACGAGGACGACGGTGAACAGAGCGAGAGGAGACGATTTAGTAAGTTTGACGGCGCTAGG 578
Query 480 GTTTAGAATTACCGAAGTAATTTTGTGTGTGATTTCGTTTTCAATCATGGCGGCTGATAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GTTTAGAATTACCGAAGTAATTTTGTGTGTGATTTCGTTTTCAATCATGGCGGCTGATAA 638
Query 540 AACTCAAGGATGGAGCGGCGATTCCTATGATCGCTACAAAGAGTACAGGTATTGTTTGGC 599
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 639 AACTCAAGGATGGAGTGGCGATTCTTATGATCGCTACAAAGAGTACAGGTATTGTTTGGC 698
Query 600 TGTGAACGTTATAGCATTCGTTTACTCTGCATTTGAAGCTTGTGACGCTGCTTGCTACAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 TGTGAACGTTATAGCATTCGTTTACTCTGCATTTGAAGCTTGTGACGCTGCTTGCTACAT 758
Query 660 CGCCAAAGAGAGTTATATGATGAACTGTGGATTTCATGACTTATTCGTTTTCTCCATGGA 719
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 759 CGCAAAAGAGAGTTATATGATCAACTGTGGATTTCATGACTTATTCGTTTTCTCCATGGA 818
Query 720 TCAACTTCTTGCATATCTTCTAATGTCGGCTTCTTCATGTGCTGCGACTCGAGTTGATGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 TCAACTTCTTGCATATCTTCTAATGTCGGCTTCTTCATGTGCTGCGACTCGAGTTGATGA 878
Query 780 TTGGGTATCTAATTGGGGTAAAGATGAGTTTACTCAAATGGCAACCGCTTCCATCGCGGT 839
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 879 TTGGGTATCTAATTGGGGCAAAGATGAGTTTACTCAAATGGCAACCGCTTCCATCGCGGT 938
Query 840 TTCCTTTTTAGCGTTTGGAGCGTTTGCGGTCAGCGCTTTGATTTCTTCTTACAGACTCTT 899
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 939 TTCCTTTTTAGCGTTTGGAGCGTTCGCGGTCAGCGCGTTGATTTCTTCTTACAGGCTCTT 998
Query 900 CACTCATGCTTCCTCCTAGTTGTGTTG 926
|||||||||||||||||||||||||||
Sbjct 999 CACTCATGCTTCCTCCTAGTTGTGTTG 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5