BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951070

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17920.1 | Symbols:  | Outer arm dynein light chain 1 protei...   104    5e-22


> AT3G17920.1 | Symbols:  | Outer arm dynein light chain 1 protein 
| chr3:6137255-6142023 FORWARD LENGTH=3033
Length=3033

 Score =  104 bits (56),  Expect = 5e-22
 Identities = 68/74 (92%), Gaps = 0/74 (0%)
 Strand=Plus/Plus

Query  161   TCAGATTCCAACATTGATGAGACTTGTAGGATTTACGTTAGTTGTGATTGTATAATAGAA  220
             |||||||||| || |||||||||||||||||||||||||||||||||||| ||| || | 
Sbjct  2185  TCAGATTCCAGCAATGATGAGACTTGTAGGATTTACGTTAGTTGTGATTGCATACTACAG  2244

Query  221   CAAGAATCCACCTA  234
             ||||||||||||||
Sbjct  2245  CAAGAATCCACCTA  2258



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14627914959


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5