BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951082
Length=4834
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48050.1 | Symbols: | BAH domain ;TFIIS helical bundle-like... 1258 0.0
AT3G48060.1 | Symbols: | BAH domain ;TFIIS helical bundle-like... 1212 0.0
> AT3G48050.1 | Symbols: | BAH domain ;TFIIS helical bundle-like
domain | chr3:17733533-17739412 REVERSE LENGTH=5482
Length=5482
Score = 1258 bits (681), Expect = 0.0
Identities = 1252/1521 (82%), Gaps = 65/1521 (4%)
Strand=Plus/Plus
Query 43 TTGATGAGAGGAAGA-AGAAAGGTCATCGTCGGCTTATGTTTAGA-CCTCCTTCTCGTGT 100
||| |||| || ||| | ||| ||| |||||||| ||||| | | | ||| ||||||||
Sbjct 15 TTG-TGAGCGG-AGACACAAAAGTCGTCGTCGGCACATGTTGATATCTTCC-TCTCGTGT 71
Query 101 AATTTCGAGC-GTCCACGcttcttgttcttcgtctctctccatt-tcttcttctacttcc 158
|||| ||| | || | | | | ||||||| | | | ||| || ||||| ||||| ||
Sbjct 72 AATTGCGA-CTGTGGAAGGTGGTGGTTCTTCTTGTTTGTCC-TTATCTTCATCTACCTCG 129
Query 159 ttttctAAGGACGGACGCAGAATTAGTGTTGGTGACTCTGCTCTCTTTAAACCACCGCAG 218
|||||||||||||| |||| ||||||||||||||||| |||||| ||||| ||||| |||
Sbjct 130 TTTTCTAAGGACGGGCGCAAAATTAGTGTTGGTGACTGTGCTCTGTTTAAGCCACCACAG 189
Query 219 GATTGCCCACCGTTTATTGGTTTGATTCGCTTGGTCATTCCTGAGAAAGAAGGCAAGTTT 278
||||| |||||||| ||||| | ||||||||| ||||| ||||| |||||| |||||
Sbjct 190 GATTGTCCACCGTTCATTGGGATAATTCGCTTGATCATTGCTGAGGAAGAAGATAAGTTG 249
Query 279 AAGCTGCGTGTGAATTGGCTGTATCGACCTGCGGAATTGAAGCTTGGCAAAGGCATCCTT 338
||| || |||| |||||||| |||||||| | ||||| || ||||||||||||||||||
Sbjct 250 AAGTTGGGTGTTAATTGGCTTTATCGACCCACTGAATTAAAACTTGGCAAAGGCATCCTT 309
Query 339 TTGGAGGCTCAGCCTAACGAAATCTTTTATTCCTTTCACGAGGATGAGATACCGGCTGCA 398
| |||||| |||| |||||| ||||||| ||||||||||||||| | ||||| ||||||
Sbjct 310 CTAGAGGCTGAGCCGAACGAACTCTTTTACTCCTTTCACGAGGATAATATACCTGCTGCA 369
Query 399 TCCTTATTGCATCCGTGTAAAGTTACCTTTCTTCCAAGAGGCGTTGAATTGCCATCTGG- 457
|| ||| ||||||||||||||||| |||| ||||||||||| |||||| ||||||||||
Sbjct 370 TCTTTACTGCATCCGTGTAAAGTTGCCTTCCTTCCAAGAGGTGTTGAACTGCCATCTGGT 429
Query 458 AGTC-TCTTCATTCGTGTGTTGGCGAGTTTATGATGTTATGAATGATTGCATT-TGGTGG 515
| || | || || |||||| |||||||||| || |||| || || || || ||||||
Sbjct 430 A-TCAGC-TCGTTTGTGTGTCGGCGAGTTTACGACGTTACAAACGAGCGC-TTATGGTGG 486
Query 516 CTGACTGATCAAAACTATATAGATGAACGGCAACAAGAAGTAGATAAGTTATTGTGTAAG 575
|||||||||||| ||||||| ||||| || |||| ||||||||| |||||||||||||||
Sbjct 487 CTGACTGATCAAGACTATATTGATGATCGACAACTAGAAGTAGACAAGTTATTGTGTAAG 546
Query 576 ACTCGCTCCGAGATGCATACCACACT--A-CAGGGTGGTCGTTCT-CCTAG--GATGAAT 629
||||| || || |||||||| ||| | | ||||||||||| ||| || || ||||||
Sbjct 547 ACTCGTTCAGAAATGCATACAACATTACAGCAGGGTGGTCGGTCTCCCAAGTCCATGAAT 606
Query 630 AGTCCGACAACATCGCAAGTGAAAGCTGGGGCAGATGGCATGCAGAACAGTAACTCCTTT 689
||||| |||||||| ||| | || ||||||||| ||||||||||||| ||||
Sbjct 607 AGTCCAACAACATCACAACCG-AA--------AGATGGCATCCAGAACAGTAACT-CTTT 656
Query 690 TCT-TCACAGGGTAAGGGAAGGAAGAGAGAGCGTGCT-GATCAGGGTTCCGAATCTGTGA 747
||| || ||||||||||||||||| ||||||||| | ||||| |||||||| ||||| |
Sbjct 657 TCTCTCTCAGGGTAAGGGAAGGAAAAGAGAGCGT-ATGGATCATGGTTCCGAGTCTGTTA 715
Query 748 AACGGGAACGTCCAAGTCGGGTTGATGATAGTGGTTCTGGTTTCCTAAGAACAGAAAGCA 807
|| |||||||| | ||||| || ||||| |||||||||||| ||| ||||||||||||
Sbjct 716 AAAGGGAACGTTCTAGTCGAGTAGATGACAGTGGTTCTGGTCCCCTCAGAACAGAAAGCG 775
Query 808 GTTTGAAA-TCTGAGATTGCTAAAA-TTACAGAAAAAGGCGGGCTAGTTGACTCTGATGG 865
|||| ||| ||||| ||| ||||| ||||||| ||||| || || || || ||||| ||
Sbjct 776 GTTT-AAAGTCTGAAATT-TTAAAATTTACAGAGAAAGGTGGTCTGGTGGATTCTGAAGG 833
Query 866 GGTTGAGAGATTGGTGCAGCTCATGCTGCCTGAGAGAAATGAGAAGAAAATAGACTTGGT 925
||||| | |||||| |||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 834 AGTTGAAAAATTGGTTCAGCTCATGCTGCCTGAGAGGAATGAAAAGAAAATAGACTTAGT 893
Query 926 TTGCCGAT-CAATTCTTGCAGGTGTTGTAGCAGCAACAGACAAGTTTGATTGCCTCAGTC 984
| |||| | ||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 894 TGGCCG-TGCAATTCTTGCAGGGGTTGTAGCGGCAACAGACAAGTTTGATTGCCTTAGTC 952
Query 985 GTTTTGTCCAGCTCAGGGGATTACCTGTTTTTGATGAGTGGCTACAGGAAATTCATAAAG 1044
|||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 953 GTTTTGTCCAGCTCAGGGGATTACCTGTGTTTGATGAGTGGCTGCAGGAAGTTCATAAAG 1012
Query 1045 GGAAAATTGGGGATGCGAGCAGTCCCAAAGATAATGATAGATCAGTGGACGATTTTCTCT 1104
||||| ||||||||| | ||||||||||||| | |||||| | ||| |||||||| ||||
Sbjct 1013 GGAAAGTTGGGGATGGGGGCAGTCCCAAAGACAGTGATAGGTTAGTAGACGATTTCCTCT 1072
Query 1105 TGA-TCTTACTTCGTGCTCTTGATAAGCTACCTGTGAATCTCAATGCTCTACAGACTTGT 1163
| | |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1073 T-AGTCTTACTTCGGGCTCTTGATAAGCTACCTGTGAATCTCAACGCGCTACAGACTTGT 1131
Query 1164 AACATAGGAAAGTCTGTTAACCATTTGCGATCACATAAGAACTCAGAAATTGGGAAAAAG 1223
||||| |||||||||||||| ||| | || |||||||| || ||||| |||||||||||
Sbjct 1132 AACATTGGAAAGTCTGTTAATCATCTACGCTCACATAAAAATTCAGAGATTGGGAAAAAA 1191
Query 1224 GCAAGGAGCTTGGTTGATACGTGGAAGAAACGTGTTGAGGCAGAAATGGATGCAAAGTCT 1283
||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1192 GCAAGGAGCTTGGTTGACACTTGGAAGAAACGAGTTGAGGCAGAAATGGATGCGAAGTCT 1251
Query 1284 GGATCCAATCAGGGTACATCTTGGCCTGGAAGACCTCGTCAGTCTGAAGTTTCTCATGGG 1343
|||||||| |||||| || ||||||||||||| | | |||| | | |||
Sbjct 1252 GGATCCAACCAGGGTGTTTCCTGGCCTGGAAGAC-T-G--AGTC--A--T-------GGG 1296
Query 1344 GGTAGACATTCAGGTG-TATCTGCTGATGCAA-CAAAGACATCAACATCACATCTACATC 1401
|| || |||||||||| | || || || |||| ||| ||||||| ||||||| ||||||
Sbjct 1297 GGAAGGCATTCAGGTGGT-TCCGCGGAGGCAAACAA-GACATCATCATCACACCTACATG 1354
Query 1402 CTTCTAAGTCCGTGTCCGTCAAA-ATACCG-TCAGAAAACAGCATGAAGTCTGCAACTAC 1459
|||||||||| || || |||||| | || | | ||||||| | |||||| || | | ||
Sbjct 1355 CTTCTAAGTCTGTCTCGGTCAAACA-ACAGGTG-GAAAACAACCTGAAGTGTGTAGCCAC 1412
Query 1460 ATCTCCAAGTTCTACTAGATCAGCCCCATCACCTGGAACAGGTGTTTCGGTTGCTAATGA 1519
|| ||| | || || |||||||| || || || ||| |||||| | ||| |||| ||
Sbjct 1413 GTCGCCAGGCTCCACAAGATCAGCTCCTTCTCCGGGATCAGGTGGTAATGTTTCTAAAGA 1472
Query 1520 TGGGCAGCAAAGAAATACTGG 1540
||| ||||| ||||| ||||
Sbjct 1473 TGGACAGCAGCGAAATGCTGG 1493
Score = 675 bits (365), Expect = 0.0
Identities = 786/983 (80%), Gaps = 54/983 (5%)
Strand=Plus/Plus
Query 3877 ATTCCTCTGGTGGCCTGGATCTTGATCTAAACAAACTTGATGATCCGACTGATATGAAT- 3935
|||| ||||| ||||| |||||||||||||||||| |||||||| | ||||||||| ||
Sbjct 3902 ATTCTTCTGGAGGCCTTGATCTTGATCTAAACAAAGTTGATGATTCAACTGATATG-ATC 3960
Query 3936 AATTACACAAT-AAGCAGCGGTCATCGGGTAGACTCATCTTTTCAACAAG--CAA--A-C 3989
| |||||||| || ||| |||||||| |||| ||||||||||| || | || | |
Sbjct 3961 AGCTACACAATGAA-CAGTAGTCATCGGCTAGATTCATCTTTTCAGCAGGTTAAATTACC 4019
Query 3990 -TTTTCTGGTGGTCGTAGAGATTTTGATTTAAACGATGGACCCGCTGT-TGATGATTCGA 4047
| |||||||||||||||||||||||||||| |||||||| | || ||||||| | |
Sbjct 4020 ATCGACTGGTGGTCGTAGAGATTTTGATTTAAATGATGGACCTG-TGGGTGATGATGC-A 4077
Query 4048 G-TGTTGAGTCATCTATGGTTTTTACTCAACATTCCCGAAATGGCTTGACATCACAGCCA 4106
| ||||||| ||||||||||| | | ||||||||| |||| ||||||| ||||||| |||
Sbjct 4078 GCTGTTGAGCCATCTATGGTTCTAAATCAACATTCACGAAGTGGCTTGCCATCACAACCA 4137
Query 4107 A-TGATCTCTGGAATAAGAATGAATGGTGAACACATGGC-AGCTGGCTTCTCATCTTGGT 4164
| |||||||||| || ||||||| ||| ||||||| || | |||||| ||||||
Sbjct 4138 TCTC-TCTCTGGAATTCGAGTGAATGGCGAAAACATGGCTAG-T---TTCTCAACTTGGT 4192
Query 4165 TTCCTGCTGCTAACAATTATTCAGCAATGAGTATTCCTC-AAGTCTTGCCTGATCGAGGC 4223
|||||||||||||| ||||||||| |||| || |||| || | | |||||| ||||
Sbjct 4193 TTCCTGCTGCTAACGCTTATTCAGCTGTGAGCATGCCTCCAATTAT-GCCTGAGAGAGGT 4251
Query 4224 GATCACCCTTTTCCAGTTATTACAAG-CAATGGACCACAGAGGATGGTGGGTCCAACATC 4282
||||| ||||||||| | ||| | | | ||| |||||||| ||| ||||||||||| |
Sbjct 4252 GATCAGCCTTTTCCAATGATTGCCACTCG-TGGCCCACAGAGAATGTTGGGTCCAACAAC 4310
Query 4283 CGGAGTTTCATCATTTACACCTGATATG-TACAGAGGCCCAGTTTTG-CTATCTTCTCCG 4340
|| ||||| |||||||| ||||| | | ||||| || || |||||| | || |||||
Sbjct 4311 TGGTGTTTCCTCATTTACCCCTGA-AGGGTACAGGGGTCCTGTTTTGTCG-TCGTCTCCA 4368
Query 4341 GC-AGTTTCATTCCCGCCCACAGCATTTCAGTATCCCG-CGTTTCCTTTTGGAACCAGTT 4398
|| | | |||| | | ||||| | || |||||||| | | ||||||||||||| ||| |
Sbjct 4369 GCCA-TGCCATTTCAGTCCACAACGTTCCAGTATCCTGTC-TTTCCTTTTGGAAACAGCT 4426
Query 4399 TTCCTC-TTGCCTCAGCAAATTTTCCAGGCT-CTTCGACTCCATACATGGACTCTTCATC 4456
| || | || ||||||| ||||| || || | |||| || || ||||||| ||||| ||
Sbjct 4427 TCCC-CGTTACCTCAGCGAATTTCCCTGG-TGCTTCTACAGCACACATGGATTCTTCTTC 4484
Query 4457 AAGTGGCAG-GCTTTGTTTCCCCCCTGTCAACTCTCAAATATTGGGTCCAGGAGTTGCCA 4515
||| || || |||| | |||||| |||||||||||||||||||||||| |||||| |||
Sbjct 4485 AAGCGGGAGAGCTT-GCTTCCCCGGTGTCAACTCTCAAATATTGGGTCCTGGAGTT-CCA 4542
Query 4516 -TCCCGTCTAATTATCCAAGGCCTTATGTTGTAAACCTCCCAAACGGT---AGCAATGGA 4571
| ||||||||||| ||||| |||||| | || ||||||||||||| ||||||||
Sbjct 4543 GTTCCGTCTAATTACCCAAGACCTTATATAGTTGGCCTCCCAAACGGTGGTAGCAATGGC 4602
Query 4572 GGAGTTTCGGACAACAACAGTGCAAAATGGTTTAGATCAGGTCTTGACTTAAATTCCGGA 4631
|| |||| |||||| | | | ||| |||||||| ||||| |||||||||||||| ||
Sbjct 4603 GGTGTTTTGGACAATGGC-GCG-AAA-TGGTTTAGGTCAGGACTTGACTTAAATTCTGGT 4659
Query 4632 CCAGGAGGGCATGAAACTGATGGGA-GAGATGAAGCAGCACTTGTA-CAAAGACAATTAT 4689
|| ||||| |||||||| || |||| |||| ||| || ||||||| ||| | |||||||
Sbjct 4660 CCTGGAGGTCATGAAACAGA-GGGAAGAGACGAATCAACACTTGTGGCAAGG-CAATTAT 4717
Query 4690 CTTCCTCAGGTTCCTTACCTTTGAAAGATGATCAGGCAAGAATGTATCAGATGTCAGGTG 4749
| || || | ||||||||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct 4718 CCTCATCTGCTTCCTTACCTTTGAAGGAGGATCAAGCAAGAATGTATCAAATGTCAGGTG 4777
Query 4750 GT-TCTCTCAAGAGGAAGGAACCAGATGGTGGATGGGATGGATATAAGCAATCCTCATGG 4808
|| | ||| |||||||| ||||| || || |||||||||||||||| ||| |||||||||
Sbjct 4778 GTGT-TCTGAAGAGGAAAGAACCGGAAGGAGGATGGGATGGATATAGGCAGTCCTCATGG 4836
Query 4809 CAATAACAA-ACCTCAGAATCTC 4830
|||||||| | |||||||||||
Sbjct 4837 CAATAACAGTAGCTCAGAATCTC 4859
Score = 411 bits (222), Expect = 4e-113
Identities = 941/1271 (74%), Gaps = 118/1271 (9%)
Strand=Plus/Plus
Query 1556 AGCTGGGCTGAGCAGGAGCTTTTCATCGCATA-GAACTG-CAACTTCGGAGAAAGTTTCT 1613
|||||| |||| || ||||| ||||| || | ||| || | |||| |||||| |||||
Sbjct 1740 AGCTGGTTTGAGTAGAAGCTTCTCATCACACAGGAA-TGTC-CCTTCTGAGAAAATTTCT 1797
Query 1614 CAATCAACTCTGGCACCTGAAAAGACT-TGTGACGTACCGATGGCTGAAGGTTTCAGTAA 1672
||||||| | || || ||||||||||| | ||| || || || |||| |||| | ||||
Sbjct 1798 CAATCAAGTTTGACATCTGAAAAGACTCT-TGAGGTTCCTCTGACTGAGGGTTCCGGTAA 1856
Query 1673 CAAGTTGATCGTTAAGCTGCCGAAACGTGGTCGCAGTCCGGCACAGAGTGTTAGTGGAGG 1732
|| ||||| || ||||||||||| |||||||| ||||| || || ||||| ||||||||
Sbjct 1857 TAAATTGATTGTGAAGCTGCCGAATCGTGGTCGAAGTCCTGCTCAAAGTGTGAGTGGAGG 1916
Query 1733 TTCCTTT-GAGGACCCTGCAGTGGGT-AATAGCAGAGCTCCATCACCTGTCCCTTCCGAG 1790
| |||| || ||||||||| ||| |||||||||| | | |||||||| | | | | |
Sbjct 1917 CT-CTTTGGAAGACCCTGCA-CCGGTGAATAGCAGAGTTTCTTCACCTGTGCATGCGGTG 1974
Query 1791 AAGCATGATCAATTTGACCGA-AACGTGAAAGAAATGAATGATACATATCGAGCTAACT- 1848
||||| || | || ||| | | |||| || ||||| ||| || | |||||| |||| |
Sbjct 1975 AAGCAGGAACTATGTGA-CAATAACGGGAGAGAAAAAAATCATTCTTATCGACCTAA-TG 2032
Query 1849 TTAGCCCTGATGC-T-AATACTGAATCTTCGCAAAACAATGACCTTAAAA-ATCTATCGA 1905
| ||| ||| | | | ||| |||| |||| ||||| |||||| |||||| || | | ||
Sbjct 2033 TGAGCTCTG-T-CTTGAATGCTGAGTCTTGGCAAAGCAATGA-ATTAAAAGATATTTTGA 2089
Query 1906 CAGTTTCAG-ATGAGGTAGCTGGTTC-CC-CTTCTGTTAATGCTGGTGGTGAGCATGGCA 1962
||| || | | |||| ||||||||| || | | || | |||||||| ||||| || |
Sbjct 2090 CAGGCTC-GCAAGAGGCAGCTGGTTCACCAC-T-TG-T--TGCTGGTGATGAGCGCGG-A 2142
Query 1963 -AGGCTGTTAATGATTCTAG-TAAAGTAGT-AGGGAATGCCAAACCCACTTCTCCTACTC 2019
|| | |||| |||||| | ||||| | | ||||||| ||| ||| ||| | ||
Sbjct 2143 GGGGATCTTAAGGATTCT-GATAAAGCA-TCTGGGAATGTTAAAGGCACATCT--TCCT- 2197
Query 2020 TAGGAGATGACGTCCAAA-CTGAAAAAAGGCATTGTGGATCACACAGCTCTATGAATGCC 2078
||||| |||| || |||| ||| | | |||||| | ||| ||| ||| || ||||||||
Sbjct 2198 TAGGAAATGA-GTTCAAATCTGGAGAGAGGCATGGCGGAACACTCAGTTCGATGAATGCT 2256
Query 2079 TTGATTGAAAGTTGTGTCAGGGACTCTGAGACAAATGCGTGTATGGCTGGTGCGGATGAT 2138
|||||||||||||||||||| |||||||||| ||||| | | |||||||| ||||||||
Sbjct 2257 TTGATTGAAAGTTGTGTCAGATACTCTGAGACGAATGCCTCTTTGGCTGGTTCGGATGAT 2316
Query 2139 GTTGGAATGAATCTTCTAGCTACTGTAGCTGCTGATGAAATGTCCAAATCCCCTGTTGCA 2198
||||||||||||||||| |||| ||| ||||||||||| ||||| ||||| |||||||||
Sbjct 2317 GTTGGAATGAATCTTCTTGCTAGTGTTGCTGCTGATGAGATGTCTAAATCGCCTGTTGCA 2376
Query 2199 TCACCCTCTGTATC-CAGGGTTTCAGATTCCTTGATGAATG-ATA-GCT-CCATA-GCAC 2253
|| ||||| ||||| || | | || ||||| ||||||||| | | || | || | |
Sbjct 2377 TCTCCCTCAGTATCTCA-GCCTCCAAATTCCGTGATGAATGAAAATTCTACTGTAGGGA- 2434
Query 2254 CACGAATCACAAA--T--T--CTTTGGATGGCTTACCTCGCGAACAAGC-TGAACCT-AT 2305
|| ||| ||||| | | ||| ||||||||| |||| ||| ||| | | || || |
Sbjct 2435 -AC-AAT-ACAAAGCTAATGGCTTCGGATGGCTTGCCTCACGAGCAA-CATCAAGCTGTT 2490
Query 2306 TGCCAAGAATCCCATGGT--TGA--TA-TTGAGCAACATGTCAATAGTAGTGGTGA-GCA 2359
|| | | || || ||| | |||||||||||| | |||||||| | ||
Sbjct 2491 TG-TACCTCTGTCA--GTACTGAGCAAGGTGAGCAACATGTTAGCAGTAGTGG-CACACA 2546
Query 2360 GTTGCCGGCTTTGGAGAAT-GTGAATGATTCTAAG-CCGGGAGATCTTGATGAGAACTCC 2417
||| || | || ||| ||||| |||||| || ||||||| |||| ||| || |
Sbjct 2547 GTT---GGAGTCAGA-AATAAAAAATGAATCTAAGACC-GGAGATCGTGATAAGAGCT-C 2600
Query 2418 G-ACTCAGA-AATCGAAGAAT-TGCAAAGGTTGGTGGATCAGTGCTTAGAGAGCAATGAA 2474
| | ||||| | | |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2601 GAATTCAGACACT-GAAG-ATCTGCAAAGGTTGGTGGATCAGTGCTTAGAGAGCAATGAC 2658
Query 2475 AATTCAGATGATGTTGTTGCTCCAAGTACTGTGGCCAC-AACAGGCATTGGAG-AAAACA 2532
|||||||||| |||||||||| | | || | |||| || || | || || |||| |
Sbjct 2659 AATTCAGATGGTGTTGTTGCTTCGCCTGCTTTACCCACTAA-AGCCGTTA-AGGAAAAGA 2716
Query 2533 TGTCTGA-TGATAGTGA-TAGTGGGGTAGTTA-GTGACCTAAAGACTGATGTTGCATCAG 2589
| | ||| ||||||||| | ||||| | | | | || |||||||||||||| |||||
Sbjct 2717 TTT-TGAATGATAGTGACTC-TGGGGAACTGAAG-GATATAAAGACTGATGTTAAATCAG 2773
Query 2590 AGACAGAACG-AG-TGGCAGA-TACAACGAAGAAGAC-AGGAAACTCTTTGTTAAGTGAA 2645
|| | || | | | | || | ||||||| |||| || || ||| || ||| |||
Sbjct 2774 AGGCTGATTGCACAT--CTGACT-CAACGAA-AAGAGTAGCAAGCTCAATGCTAACCGAA 2829
Query 2646 TGTAAAGCCATTGGCAGATGTCAGAATGCAGATTCTTTGGTTGCTGAACATTCACACCC- 2704
|||| || || | | | || | || | ||||||| ||| || |||||| || |||
Sbjct 2830 TGTAGAG--AT-GT-A-A-GTAAAAAGGTAGATTCTGTGGCTGTTGAACAG--ACTCCCT 2881
Query 2705 -GGACGTTGTTGGTGAT-AGTACGAAAGAAGAGAAACCG--AA-GGTGATAGTGAGTTCT 2759
||| | ||||| |||| | || ||||||||||||||| || || | | ||||||||
Sbjct 2882 TGGAAGGTGTTGATGATGA-TAAGAAAGAAGAGAAACCCCCAACGGCG-T--TGAGTTCT 2937
Query 2760 GAGCTTGTTAA 2770
||||| |||||
Sbjct 2938 GAGCTAGTTAA 2948
> AT3G48060.1 | Symbols: | BAH domain ;TFIIS helical bundle-like
domain | chr3:17743114-17748736 REVERSE LENGTH=5250
Length=5250
Score = 1212 bits (656), Expect = 0.0
Identities = 1274/1564 (81%), Gaps = 75/1564 (5%)
Strand=Plus/Plus
Query 1 GGAGAAGATGAAAGAAGGCTATGCATGGGAGGGTTTGTCAGGTTGATGAGAGGAAGAAGA 60
||||||||||| |||||||||||||||||||||||||| | | | |||| | | |
Sbjct 275 GGAGAAGATGATAGAAGGCTATGCATGGGAGGGTTTGT---G-AG-CG-GAGGCA-CA-A 326
Query 61 AAGGTCATCGTCGGCTTATGTTTAGA-CCTCCTTCTCGTGTAATTTCGAGC-GTCCACGc 118
|| ||| |||||||| ||||| | | | ||| |||||||||||| ||| | || | |
Sbjct 327 AA-GTCGTCGTCGGCACATGTTGATATCTTCC-TCTCGTGTAATTGCGA-CTGTGGAAGG 383
Query 119 ttcttgttcttcgtctctctccatt-tcttcttctacttccttttctAAGGACGGACGCA 177
| | ||||||| | | | ||| || ||||| ||||| || |||||||||||||| ||||
Sbjct 384 TGGTGGTTCTTCTTGTTTGTCC-TTATCTTCATCTACCTCGTTTTCTAAGGACGGGCGCA 442
Query 178 GAATTAGTGTTGGTGACTCTGCTCTCTTTAAACCACCGCAGGATTGCCCACCGTTTATTG 237
||||||||||||||||| |||||| ||||| ||||| |||||||| |||||||| ||||
Sbjct 443 AAATTAGTGTTGGTGACTGTGCTCTGTTTAAGCCACCACAGGATTGTCCACCGTTCATTG 502
Query 238 GTTTGATTCGCTTGGTCATTCCTGAGAAAGAAGGCAAGTTTAAGCTGCGTGTGAATTGGC 297
| | ||||||||| ||||| ||||| |||||| ||||| ||| || |||| |||||||
Sbjct 503 GGATAATTCGCTTGATCATTGCTGAGGAAGAAGATAAGTTGAAGTTGGGTGTTAATTGGC 562
Query 298 TGTATCGACCTGCGGAATTGAAGCTTGGCAAAGGCATCCTTTTGGAGGCTCAGCCTAACG 357
| |||||||| | ||||| || ||||||||||| |||||| | |||||| |||| ||||
Sbjct 563 TTTATCGACCCACTGAATTAAAACTTGGCAAAGGTATCCTTCTAGAGGCTGAGCCGAACG 622
Query 358 AAATCTTTTATTCCTTTCACGAGGATGAGATACCGGCTGCATCCTTATTGCATCCGTGTA 417
|| ||||||||||||||||||||||| | ||||| || ||||| ||| ||||||||||||
Sbjct 623 AACTCTTTTATTCCTTTCACGAGGATAATATACCTGCAGCATCTTTACTGCATCCGTGTA 682
Query 418 AAGTTACCTTTCTTCCAAGAGGCGTTGAATTGCCATCTGG-AGTC-TCTTCATTCGTGTG 475
||||| |||| ||||||||||| |||||| |||||||||| | || | || || |||||
Sbjct 683 AAGTTGCCTTCCTTCCAAGAGGTGTTGAACTGCCATCTGGTA-TCAGC-TCGTTTGTGTG 740
Query 476 TTGGCGAGTTTATGATGTTATGAATGATTGCATT-TGGTGGCTGACTGATCAAAACTATA 534
| |||||||||| || |||| || || || || |||||||||||||||||| ||||||
Sbjct 741 TCGGCGAGTTTACGACGTTACAAACGAGCGC-TTATGGTGGCTGACTGATCAAGACTATA 799
Query 535 TAGATGAACGGCAACAAGAAGTAGATAAGTTATTGTGTAAGACTCGCTCCGAGATGCATA 594
| ||||| || |||| ||||||||| |||||||||||||||||||| || || |||||||
Sbjct 800 TTGATGATCGACAACTAGAAGTAGACAAGTTATTGTGTAAGACTCGTTCAGAAATGCATA 859
Query 595 CCACACT--A-CAGGGTGGTCGTTCTCC-TAG--GATGAATAGTCCGACAACATCGCAAG 648
| ||| | | ||||||||||||||||| || ||||||||||| |||||||| |||
Sbjct 860 CAACATTACAGCAGGGTGGTCGTTCTCCAAAGTCCATGAATAGTCCAACAACATCACAAC 919
Query 649 TGAAAGCTGGGGCAGATGGCATGCAGAACAGTAACTC-CTTTTCTTCACAGGGTAAGGGA 707
| || ||||||||| ||||||| ||||| |||||| || ||| ||||||||
Sbjct 920 CG-AA--------AGATGGCATCCAGAACAACAACTCTCTTTTC-TCTCAGAGTAAGGGA 969
Query 708 AGGAAGAGAGAGCGTGCT-GATCAGGGTTCCGAATCTGTGAAACGGGAACGTCCAAGTCG 766
||||| ||||||||| | ||||| ||||| || ||||| |||||||||||| | |||||
Sbjct 970 AGGAAAAGAGAGCGT-ATGGATCATGGTTCTGAGTCTGTTAAACGGGAACGTTCTAGTCG 1028
Query 767 GGTTGATGATAGTGGTTCTGGTTTCCTAAGAACAGAAAGCAGTTTGAA-ATCTGAGATTG 825
|| ||||| |||||||| ||| ||| ||||| |||||| |||| || |||||||||
Sbjct 1029 AGTAGATGACAGTGGTTCCGGTCCCCTCAGAACCGAAAGCGGTTT-AACGTCTGAGATT- 1086
Query 826 CTAAAA-TTACAGAAAAAGGCGGGCTAGTTGACTCTGATGGGGTTGAGAGATTGGTGCAG 884
||||| ||||||| ||||| || || || || ||||| || ||||| | |||||| |||
Sbjct 1087 TTAAAATTTACAGAGAAAGGTGGTCTGGTGGATTCTGAAGGAGTTGAAAAATTGGTTCAG 1146
Query 885 CTCATGCTGCCTGAGAGAAATGAGAAGAAAATAGACTTGGTTTGCCGAT-CAATTCTTGC 943
||||||||||||||||| ||||| |||||||||||||| ||| |||| | | ||||||||
Sbjct 1147 CTCATGCTGCCTGAGAGGAATGAAAAGAAAATAGACTTAGTTGGCCG-TGCGATTCTTGC 1205
Query 944 AGGTGTT-GTAGCAGCAACAGACAAGTTTGATTGCCTCAGTCGTTTTGTCCAGCTCAGGG 1002
||| ||| |||||||| ||| ||| |||||||||||| ||||||||||||||||||||||
Sbjct 1206 AGG-GTTTGTAGCAGCGACAAACAGGTTTGATTGCCTTAGTCGTTTTGTCCAGCTCAGGG 1264
Query 1003 GATTACCTGTTTTTGATGAGTGGCTACAGGAAATTCATAAAGGGAAAATTGGGGATGCGA 1062
||||||| || |||||||||||||| |||||| |||||||||||||| ||||||||| |
Sbjct 1265 GATTACCCGTGTTTGATGAGTGGCTGCAGGAAGTTCATAAAGGGAAAGTTGGGGATGGGG 1324
Query 1063 GCAGTCCCAAAGATAATGATAGA-TCAGTGGACGATTTTCTCTT-GATCTTACTTCGTGC 1120
||||||||||||| | |||||| | ||| |||||||| ||||| | |||||||||| ||
Sbjct 1325 GCAGTCCCAAAGACAGTGATAGGCT-AGTAGACGATTTCCTCTTAG-TCTTACTTCGGGC 1382
Query 1121 TCTTGATAAGCTACCTGTGAATCTCAATGCTCTACAGACTTGTAACATAGGAAAGTCTGT 1180
||||||||||||||| ||||||||||| || || |||||||||||||| |||||||||||
Sbjct 1383 TCTTGATAAGCTACCGGTGAATCTCAACGCGCTTCAGACTTGTAACATTGGAAAGTCTGT 1442
Query 1181 TAACCATTTGCGATCACATAAGAACTCAGAAATTGGGAAAAAGGCAAGGAGCTTGGTTGA 1240
||| ||| | || |||||||| || ||||| ||||||||||| |||||||||||||||||
Sbjct 1443 TAATCATCTACGCTCACATAAAAATTCAGAGATTGGGAAAAAAGCAAGGAGCTTGGTTGA 1502
Query 1241 TACGTGGAAGAAACGTGTTGAGGCAGAAATGGATGCAAAGTCTGGATCCAATCAGGGTAC 1300
|| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1503 CACTTGGAAGAAACGAGTTGAGGCAGAAATGGATGCGAAGTCTGGATCCAACCAGGGTGT 1562
Query 1301 ATCTTGGCCTGGAAGACCTCGTCAGTCTGAAGTTTCTCATGGGGGTAGACATTCAGGTG- 1359
|| ||||||||||||| | | |||| | | ||||| || ||||||||||
Sbjct 1563 TTCCTGGCCTGGAAGAC-T-G--AGTC--A--T-------GGGGGAAGGCATTCAGGTGG 1607
Query 1360 TATCTGCTGATGCAA-CAAAGACATCAACATCACATCTACATCCTTCTAAGTCCGTGTCC 1418
| || || || |||| ||| ||||||| ||||||| |||||| |||||||||| || ||
Sbjct 1608 T-TCCGCGGAGGCAAACAA-GACATCATCATCACACCTACATGCTTCTAAGTCTGTCTCG 1665
Query 1419 GTCAAA-ATACCG-TCAGAAAACAGCATGAAGTCTGCAACTACATCTCCAAGTTCTACTA 1476
|||||| | || | | ||||||| | |||||| || | | || || ||| | || || |
Sbjct 1666 GTCAAACA-ACAGGTG-GAAAACAACCTGAAGTGTGTAGCCACGTCGCCAGGCTCCACAA 1723
Query 1477 GATCAGCCCCATCACCTGGAACAGGTGTTTCGGTTGCTAATGATGGGCAGCAAAGAAATA 1536
||||||| || || || ||| |||||| | ||| |||| ||||| ||||| |||||
Sbjct 1724 GATCAGCTCCTTCTCCGGGATCAGGTGGTAATGTTTCTAAAGATGGACAGCAGCGAAATG 1783
Query 1537 CTGG 1540
||||
Sbjct 1784 CTGG 1787
Score = 601 bits (325), Expect = 2e-170
Identities = 749/948 (79%), Gaps = 51/948 (5%)
Strand=Plus/Plus
Query 3897 CTTGATCTAAACAAACTTGATGATCCGACTGATATGAATAATTACACAAT-AAGCAGCGG 3955
||||||||||||||| |||||||| ||||||||||| | |||||||| || ||| |
Sbjct 4216 CTTGATCTAAACAAAGTTGATGATTTAACTGATATGAACAGCTACACAATGAA-CAGTAG 4274
Query 3956 TCATCGGGTAGACTCATCTTTTCAACAAG--CAA--A-C-TTTTCTGGTGGTCGTAGAGA 4009
||||||| |||| ||||||||||| || | || | | | ||||||||||||||||
Sbjct 4275 TCATCGGCTAGATTCATCTTTTCAGCAGGTTAAATTACCATCGACTGGTGGTCGTAGAGA 4334
Query 4010 TTTTGATTTAAACGATGGACCCGCTGT-TGATGATTCGAG-TGTTGAGTCATCTATGGTT 4067
|||||||||||| |||||||| | || ||||||| | || ||||||| |||| ||||||
Sbjct 4335 TTTTGATTTAAATGATGGACCTG-TGGGTGATGATGC-AGCTGTTGAGCCATCGATGGTT 4392
Query 4068 TTTACTCAACATTCCCGAAATGGCTTGACATCACAGCCAA-TGATCTCTGGAATAAGAAT 4126
| | ||||||||| |||| ||||||| ||||||| ||| | |||||||||| || |
Sbjct 4393 CTAAATCAACATTCACGAAGTGGCTTGCCATCACAACCATCTC-TCTCTGGAATTCGAGT 4451
Query 4127 GAATGGTGAACACATGGC-AGCTGGCTTCTCATCTTGGTTTCCTGCTGCTAACAATTATT 4185
|||||| ||| ||||||| || | |||||| |||||||||||||||||||| |||||
Sbjct 4452 GAATGGCGAAAACATGGCTAG-T---TTCTCAACTTGGTTTCCTGCTGCTAACGCTTATT 4507
Query 4186 CAGCAATGAGTATTCCTC-AAGTCTTGCCTGATCGAGGCGATCACCCTTTTCCAGTTATT 4244
|||| |||| || |||| || | | |||||| |||| ||||| ||||||||| | |||
Sbjct 4508 CAGCTGTGAGCATGCCTCCAATTAT-GCCTGAGAGAGGTGATCAGCCTTTTCCAATGATT 4566
Query 4245 ACAAG-CAATGGACCACAGAGGATGGTGGGTCCAACATCCGGAGTTTCATCATTTACACC 4303
| | | ||| |||||||| ||| ||||||||||| | || ||||| |||||| | ||
Sbjct 4567 GCCACTCG-TGGCCCACAGAGAATGTTGGGTCCAACAACTGGTGTTTCCTCATTTTCCCC 4625
Query 4304 TGATATG-TACAGAGGCCCAGTTTTG-CTATCTTCTCCGGC-AGTTTCATTCCCGCCCAC 4360
||| | | ||||| || || |||||| | || ||||| || | | |||| | | ||||
Sbjct 4626 TGA-AGGGTACAGGGGTCCTGTTTTGTCG-TCGTCTCCAGCCA-TGCCATTTCAGTCCAC 4682
Query 4361 AGCATTTCAGTATCCCG-CGTTTCCTTTTGGAACCAGTTTTCCTC-TTGCCTCAGCAAAT 4418
| | || |||||||| | | ||||||||||||| || || || | || || |||| |||
Sbjct 4683 AACGTTCCAGTATCCTGTC-TTTCCTTTTGGAAATAGCTTCCC-CGTTACCCCAGCGAAT 4740
Query 4419 TTTCCAGGCT-CTTCGACTCCATACATGGACTCTTCATCAAGTGGCAG-GCTTTGTTTCC 4476
|| || || | |||| || || ||||||| ||||| ||||| || || |||| || ||
Sbjct 4741 TTCCCTGG-TGCTTCTACAGCACACATGGATTCTTCTTCAAGCGGGAGAGCTTACTT-CC 4798
Query 4477 CCCCTGTCAACTCTCAAATATTGGGTCCAGGAGTTGCCA-TCCCGTCTAATTATCCAAGG 4535
|| |||||||||||||||||||||||| |||||| ||| | ||||||||||| |||||
Sbjct 4799 CCGGTGTCAACTCTCAAATATTGGGTCCTGGAGTT-CCAGTTCCGTCTAATTACCCAAGA 4857
Query 4536 CCTTATGTTGTAAACCTCCCAAACGGT---AGCAATGGAGGAGTTTCGGACAACAACAGT 4592
|||||| | || ||||||||||||| |||||||| || |||| |||||| | | |
Sbjct 4858 CCTTATATAGTTGGCCTCCCAAACGGTGGTAGCAATGGCGGTGTTTTGGACAATAGC-GC 4916
Query 4593 GCAAAATGGTTTAGATCAGGTCTTGACTTAAATTCCGGACCAGGAGGGCATGAAACTGAT 4652
| ||| |||||||| ||||| |||||||||||||| || || ||||| |||||||| ||
Sbjct 4917 G-AAA-TGGTTTAGGTCAGGACTTGACTTAAATTCTGGTCCTGGAGGTCATGAAACAGA- 4973
Query 4653 GGGA-GAGATGAAGCAGCACTTGTA-CAAAGACAATTATCTTCCTCAGGTTCCTTACCTT 4710
|||| |||| ||| || |||||||| ||| | ||||||||||| || | |||| |||| |
Sbjct 4974 GGGAAGAGACGAATCAACACTTGTATCAAGG-CAATTATCTTCATCTGCTTCCGTACCGT 5032
Query 4711 TGAAAGATGATCAGGCAAGAATGTATCAGATGTCAGGTGGT-TCTCTCAAGAGGAAGGAA 4769
||| || ||||| |||||||||||||| |||||||||||| | ||| |||||||| |||
Sbjct 5033 CGAAGGAGGATCAAGCAAGAATGTATCAAATGTCAGGTGGTGT-TCTGAAGAGGAAAGAA 5091
Query 4770 CCAGATGGTGGATGGGATGGATATAAGCAATCCTCATGGCAATAACAA 4817
|| || || |||||||||||||||| ||| |||| || |||||||||
Sbjct 5092 CCGGAAGGAGGATGGGATGGATATAGGCAGTCCTTATAACAATAACAA 5139
Score = 252 bits (136), Expect = 3e-65
Identities = 250/304 (82%), Gaps = 11/304 (4%)
Strand=Plus/Plus
Query 3580 TTCCTGCATCCATTACTGTTGCTGCTGCTG-CAAAGGGTGCGTTTGTTCCACGTGACGAT 3638
|||||||||||||||||||||||||||| | |||||| | |||||||||||| ||| |||
Sbjct 3839 TTCCTGCATCCATTACTGTTGCTGCTGCCGTCAAAGG-TCCGTTTGTTCCACCTGAAGAT 3897
Query 3639 TTGTTGAGAAACAAAGCAACTGTTGGCTGGAGAGGATCTGCCGCCACTAGCGCCTTCCGG 3698
|||||||| | |||| ||||||| |||||||||||||| |||||||| ||||||||
Sbjct 3898 CTGTTGAGATATAAAGGGGCTGTTGGTTGGAGAGGATCTGCTGCCACTAGTGCCTTCCGC 3957
Query 3699 CCAGCTGAGCCAAGAAAAA-TGCAGGAGGTGGTGCCACT-AGGCATGAATAATGTGTCTT 3756
|||||||||||||||||| | ||||| ||| | ||| || ||| || ||| |||
Sbjct 3958 CCAGCTGAGCCAAGAAAAGCT-CAGGATGTGTT---ACTGAG-CATTAACAATACCTCTA 4012
Query 3757 CGTCGGATGCTTCTACAACCGCTGGCAAGCAAACAAAGACGTTTTTGGACTTTGACCTAA 3816
| || ||||| ||||| | |||||||| || |||| ||||||| |||| |||||| | |
Sbjct 4013 CATCTGATGCATCTACTTCTGCTGGCAAACAGACAAGGACGTTTCTGGATTTTGACTTGA 4072
Query 3817 ATGTACCCGATGAGAGAGCTC-TTGAAGATCTAGCTTCCCAAAGATCAGCCAATCCCACA 3875
||||||| || ||||||| || |||||||| | |||||||||||||| | |||||||||
Sbjct 4073 ATGTACCTGACGAGAGAG-TCCTTGAAGATTTGGCTTCCCAAAGATCTGGAAATCCCACA 4131
Query 3876 AATT 3879
||||
Sbjct 4132 AATT 4135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 241152495001
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5