BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951082 Length=4834 Score E Sequences producing significant alignments: (Bits) Value AT3G48050.1 | Symbols: | BAH domain ;TFIIS helical bundle-like... 1258 0.0 AT3G48060.1 | Symbols: | BAH domain ;TFIIS helical bundle-like... 1212 0.0 > AT3G48050.1 | Symbols: | BAH domain ;TFIIS helical bundle-like domain | chr3:17733533-17739412 REVERSE LENGTH=5482 Length=5482 Score = 1258 bits (681), Expect = 0.0 Identities = 1252/1521 (82%), Gaps = 65/1521 (4%) Strand=Plus/Plus Query 43 TTGATGAGAGGAAGA-AGAAAGGTCATCGTCGGCTTATGTTTAGA-CCTCCTTCTCGTGT 100 ||| |||| || ||| | ||| ||| |||||||| ||||| | | | ||| |||||||| Sbjct 15 TTG-TGAGCGG-AGACACAAAAGTCGTCGTCGGCACATGTTGATATCTTCC-TCTCGTGT 71 Query 101 AATTTCGAGC-GTCCACGcttcttgttcttcgtctctctccatt-tcttcttctacttcc 158 |||| ||| | || | | | | ||||||| | | | ||| || ||||| ||||| || Sbjct 72 AATTGCGA-CTGTGGAAGGTGGTGGTTCTTCTTGTTTGTCC-TTATCTTCATCTACCTCG 129 Query 159 ttttctAAGGACGGACGCAGAATTAGTGTTGGTGACTCTGCTCTCTTTAAACCACCGCAG 218 |||||||||||||| |||| ||||||||||||||||| |||||| ||||| ||||| ||| Sbjct 130 TTTTCTAAGGACGGGCGCAAAATTAGTGTTGGTGACTGTGCTCTGTTTAAGCCACCACAG 189 Query 219 GATTGCCCACCGTTTATTGGTTTGATTCGCTTGGTCATTCCTGAGAAAGAAGGCAAGTTT 278 ||||| |||||||| ||||| | ||||||||| ||||| ||||| |||||| ||||| Sbjct 190 GATTGTCCACCGTTCATTGGGATAATTCGCTTGATCATTGCTGAGGAAGAAGATAAGTTG 249 Query 279 AAGCTGCGTGTGAATTGGCTGTATCGACCTGCGGAATTGAAGCTTGGCAAAGGCATCCTT 338 ||| || |||| |||||||| |||||||| | ||||| || |||||||||||||||||| Sbjct 250 AAGTTGGGTGTTAATTGGCTTTATCGACCCACTGAATTAAAACTTGGCAAAGGCATCCTT 309 Query 339 TTGGAGGCTCAGCCTAACGAAATCTTTTATTCCTTTCACGAGGATGAGATACCGGCTGCA 398 | |||||| |||| |||||| ||||||| ||||||||||||||| | ||||| |||||| Sbjct 310 CTAGAGGCTGAGCCGAACGAACTCTTTTACTCCTTTCACGAGGATAATATACCTGCTGCA 369 Query 399 TCCTTATTGCATCCGTGTAAAGTTACCTTTCTTCCAAGAGGCGTTGAATTGCCATCTGG- 457 || ||| ||||||||||||||||| |||| ||||||||||| |||||| |||||||||| Sbjct 370 TCTTTACTGCATCCGTGTAAAGTTGCCTTCCTTCCAAGAGGTGTTGAACTGCCATCTGGT 429 Query 458 AGTC-TCTTCATTCGTGTGTTGGCGAGTTTATGATGTTATGAATGATTGCATT-TGGTGG 515 | || | || || |||||| |||||||||| || |||| || || || || |||||| Sbjct 430 A-TCAGC-TCGTTTGTGTGTCGGCGAGTTTACGACGTTACAAACGAGCGC-TTATGGTGG 486 Query 516 CTGACTGATCAAAACTATATAGATGAACGGCAACAAGAAGTAGATAAGTTATTGTGTAAG 575 |||||||||||| ||||||| ||||| || |||| ||||||||| ||||||||||||||| Sbjct 487 CTGACTGATCAAGACTATATTGATGATCGACAACTAGAAGTAGACAAGTTATTGTGTAAG 546 Query 576 ACTCGCTCCGAGATGCATACCACACT--A-CAGGGTGGTCGTTCT-CCTAG--GATGAAT 629 ||||| || || |||||||| ||| | | ||||||||||| ||| || || |||||| Sbjct 547 ACTCGTTCAGAAATGCATACAACATTACAGCAGGGTGGTCGGTCTCCCAAGTCCATGAAT 606 Query 630 AGTCCGACAACATCGCAAGTGAAAGCTGGGGCAGATGGCATGCAGAACAGTAACTCCTTT 689 ||||| |||||||| ||| | || ||||||||| ||||||||||||| |||| Sbjct 607 AGTCCAACAACATCACAACCG-AA--------AGATGGCATCCAGAACAGTAACT-CTTT 656 Query 690 TCT-TCACAGGGTAAGGGAAGGAAGAGAGAGCGTGCT-GATCAGGGTTCCGAATCTGTGA 747 ||| || ||||||||||||||||| ||||||||| | ||||| |||||||| ||||| | Sbjct 657 TCTCTCTCAGGGTAAGGGAAGGAAAAGAGAGCGT-ATGGATCATGGTTCCGAGTCTGTTA 715 Query 748 AACGGGAACGTCCAAGTCGGGTTGATGATAGTGGTTCTGGTTTCCTAAGAACAGAAAGCA 807 || |||||||| | ||||| || ||||| |||||||||||| ||| |||||||||||| Sbjct 716 AAAGGGAACGTTCTAGTCGAGTAGATGACAGTGGTTCTGGTCCCCTCAGAACAGAAAGCG 775 Query 808 GTTTGAAA-TCTGAGATTGCTAAAA-TTACAGAAAAAGGCGGGCTAGTTGACTCTGATGG 865 |||| ||| ||||| ||| ||||| ||||||| ||||| || || || || ||||| || Sbjct 776 GTTT-AAAGTCTGAAATT-TTAAAATTTACAGAGAAAGGTGGTCTGGTGGATTCTGAAGG 833 Query 866 GGTTGAGAGATTGGTGCAGCTCATGCTGCCTGAGAGAAATGAGAAGAAAATAGACTTGGT 925 ||||| | |||||| |||||||||||||||||||| ||||| |||||||||||||| || Sbjct 834 AGTTGAAAAATTGGTTCAGCTCATGCTGCCTGAGAGGAATGAAAAGAAAATAGACTTAGT 893 Query 926 TTGCCGAT-CAATTCTTGCAGGTGTTGTAGCAGCAACAGACAAGTTTGATTGCCTCAGTC 984 | |||| | ||||||||||||| |||||||| ||||||||||||||||||||||| |||| Sbjct 894 TGGCCG-TGCAATTCTTGCAGGGGTTGTAGCGGCAACAGACAAGTTTGATTGCCTTAGTC 952 Query 985 GTTTTGTCCAGCTCAGGGGATTACCTGTTTTTGATGAGTGGCTACAGGAAATTCATAAAG 1044 |||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| Sbjct 953 GTTTTGTCCAGCTCAGGGGATTACCTGTGTTTGATGAGTGGCTGCAGGAAGTTCATAAAG 1012 Query 1045 GGAAAATTGGGGATGCGAGCAGTCCCAAAGATAATGATAGATCAGTGGACGATTTTCTCT 1104 ||||| ||||||||| | ||||||||||||| | |||||| | ||| |||||||| |||| Sbjct 1013 GGAAAGTTGGGGATGGGGGCAGTCCCAAAGACAGTGATAGGTTAGTAGACGATTTCCTCT 1072 Query 1105 TGA-TCTTACTTCGTGCTCTTGATAAGCTACCTGTGAATCTCAATGCTCTACAGACTTGT 1163 | | |||||||||| ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1073 T-AGTCTTACTTCGGGCTCTTGATAAGCTACCTGTGAATCTCAACGCGCTACAGACTTGT 1131 Query 1164 AACATAGGAAAGTCTGTTAACCATTTGCGATCACATAAGAACTCAGAAATTGGGAAAAAG 1223 ||||| |||||||||||||| ||| | || |||||||| || ||||| ||||||||||| Sbjct 1132 AACATTGGAAAGTCTGTTAATCATCTACGCTCACATAAAAATTCAGAGATTGGGAAAAAA 1191 Query 1224 GCAAGGAGCTTGGTTGATACGTGGAAGAAACGTGTTGAGGCAGAAATGGATGCAAAGTCT 1283 ||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||| Sbjct 1192 GCAAGGAGCTTGGTTGACACTTGGAAGAAACGAGTTGAGGCAGAAATGGATGCGAAGTCT 1251 Query 1284 GGATCCAATCAGGGTACATCTTGGCCTGGAAGACCTCGTCAGTCTGAAGTTTCTCATGGG 1343 |||||||| |||||| || ||||||||||||| | | |||| | | ||| Sbjct 1252 GGATCCAACCAGGGTGTTTCCTGGCCTGGAAGAC-T-G--AGTC--A--T-------GGG 1296 Query 1344 GGTAGACATTCAGGTG-TATCTGCTGATGCAA-CAAAGACATCAACATCACATCTACATC 1401 || || |||||||||| | || || || |||| ||| ||||||| ||||||| |||||| Sbjct 1297 GGAAGGCATTCAGGTGGT-TCCGCGGAGGCAAACAA-GACATCATCATCACACCTACATG 1354 Query 1402 CTTCTAAGTCCGTGTCCGTCAAA-ATACCG-TCAGAAAACAGCATGAAGTCTGCAACTAC 1459 |||||||||| || || |||||| | || | | ||||||| | |||||| || | | || Sbjct 1355 CTTCTAAGTCTGTCTCGGTCAAACA-ACAGGTG-GAAAACAACCTGAAGTGTGTAGCCAC 1412 Query 1460 ATCTCCAAGTTCTACTAGATCAGCCCCATCACCTGGAACAGGTGTTTCGGTTGCTAATGA 1519 || ||| | || || |||||||| || || || ||| |||||| | ||| |||| || Sbjct 1413 GTCGCCAGGCTCCACAAGATCAGCTCCTTCTCCGGGATCAGGTGGTAATGTTTCTAAAGA 1472 Query 1520 TGGGCAGCAAAGAAATACTGG 1540 ||| ||||| ||||| |||| Sbjct 1473 TGGACAGCAGCGAAATGCTGG 1493 Score = 675 bits (365), Expect = 0.0 Identities = 786/983 (80%), Gaps = 54/983 (5%) Strand=Plus/Plus Query 3877 ATTCCTCTGGTGGCCTGGATCTTGATCTAAACAAACTTGATGATCCGACTGATATGAAT- 3935 |||| ||||| ||||| |||||||||||||||||| |||||||| | ||||||||| || Sbjct 3902 ATTCTTCTGGAGGCCTTGATCTTGATCTAAACAAAGTTGATGATTCAACTGATATG-ATC 3960 Query 3936 AATTACACAAT-AAGCAGCGGTCATCGGGTAGACTCATCTTTTCAACAAG--CAA--A-C 3989 | |||||||| || ||| |||||||| |||| ||||||||||| || | || | | Sbjct 3961 AGCTACACAATGAA-CAGTAGTCATCGGCTAGATTCATCTTTTCAGCAGGTTAAATTACC 4019 Query 3990 -TTTTCTGGTGGTCGTAGAGATTTTGATTTAAACGATGGACCCGCTGT-TGATGATTCGA 4047 | |||||||||||||||||||||||||||| |||||||| | || ||||||| | | Sbjct 4020 ATCGACTGGTGGTCGTAGAGATTTTGATTTAAATGATGGACCTG-TGGGTGATGATGC-A 4077 Query 4048 G-TGTTGAGTCATCTATGGTTTTTACTCAACATTCCCGAAATGGCTTGACATCACAGCCA 4106 | ||||||| ||||||||||| | | ||||||||| |||| ||||||| ||||||| ||| Sbjct 4078 GCTGTTGAGCCATCTATGGTTCTAAATCAACATTCACGAAGTGGCTTGCCATCACAACCA 4137 Query 4107 A-TGATCTCTGGAATAAGAATGAATGGTGAACACATGGC-AGCTGGCTTCTCATCTTGGT 4164 | |||||||||| || ||||||| ||| ||||||| || | |||||| |||||| Sbjct 4138 TCTC-TCTCTGGAATTCGAGTGAATGGCGAAAACATGGCTAG-T---TTCTCAACTTGGT 4192 Query 4165 TTCCTGCTGCTAACAATTATTCAGCAATGAGTATTCCTC-AAGTCTTGCCTGATCGAGGC 4223 |||||||||||||| ||||||||| |||| || |||| || | | |||||| |||| Sbjct 4193 TTCCTGCTGCTAACGCTTATTCAGCTGTGAGCATGCCTCCAATTAT-GCCTGAGAGAGGT 4251 Query 4224 GATCACCCTTTTCCAGTTATTACAAG-CAATGGACCACAGAGGATGGTGGGTCCAACATC 4282 ||||| ||||||||| | ||| | | | ||| |||||||| ||| ||||||||||| | Sbjct 4252 GATCAGCCTTTTCCAATGATTGCCACTCG-TGGCCCACAGAGAATGTTGGGTCCAACAAC 4310 Query 4283 CGGAGTTTCATCATTTACACCTGATATG-TACAGAGGCCCAGTTTTG-CTATCTTCTCCG 4340 || ||||| |||||||| ||||| | | ||||| || || |||||| | || ||||| Sbjct 4311 TGGTGTTTCCTCATTTACCCCTGA-AGGGTACAGGGGTCCTGTTTTGTCG-TCGTCTCCA 4368 Query 4341 GC-AGTTTCATTCCCGCCCACAGCATTTCAGTATCCCG-CGTTTCCTTTTGGAACCAGTT 4398 || | | |||| | | ||||| | || |||||||| | | ||||||||||||| ||| | Sbjct 4369 GCCA-TGCCATTTCAGTCCACAACGTTCCAGTATCCTGTC-TTTCCTTTTGGAAACAGCT 4426 Query 4399 TTCCTC-TTGCCTCAGCAAATTTTCCAGGCT-CTTCGACTCCATACATGGACTCTTCATC 4456 | || | || ||||||| ||||| || || | |||| || || ||||||| ||||| || Sbjct 4427 TCCC-CGTTACCTCAGCGAATTTCCCTGG-TGCTTCTACAGCACACATGGATTCTTCTTC 4484 Query 4457 AAGTGGCAG-GCTTTGTTTCCCCCCTGTCAACTCTCAAATATTGGGTCCAGGAGTTGCCA 4515 ||| || || |||| | |||||| |||||||||||||||||||||||| |||||| ||| Sbjct 4485 AAGCGGGAGAGCTT-GCTTCCCCGGTGTCAACTCTCAAATATTGGGTCCTGGAGTT-CCA 4542 Query 4516 -TCCCGTCTAATTATCCAAGGCCTTATGTTGTAAACCTCCCAAACGGT---AGCAATGGA 4571 | ||||||||||| ||||| |||||| | || ||||||||||||| |||||||| Sbjct 4543 GTTCCGTCTAATTACCCAAGACCTTATATAGTTGGCCTCCCAAACGGTGGTAGCAATGGC 4602 Query 4572 GGAGTTTCGGACAACAACAGTGCAAAATGGTTTAGATCAGGTCTTGACTTAAATTCCGGA 4631 || |||| |||||| | | | ||| |||||||| ||||| |||||||||||||| || Sbjct 4603 GGTGTTTTGGACAATGGC-GCG-AAA-TGGTTTAGGTCAGGACTTGACTTAAATTCTGGT 4659 Query 4632 CCAGGAGGGCATGAAACTGATGGGA-GAGATGAAGCAGCACTTGTA-CAAAGACAATTAT 4689 || ||||| |||||||| || |||| |||| ||| || ||||||| ||| | ||||||| Sbjct 4660 CCTGGAGGTCATGAAACAGA-GGGAAGAGACGAATCAACACTTGTGGCAAGG-CAATTAT 4717 Query 4690 CTTCCTCAGGTTCCTTACCTTTGAAAGATGATCAGGCAAGAATGTATCAGATGTCAGGTG 4749 | || || | ||||||||||||||| || ||||| |||||||||||||| |||||||||| Sbjct 4718 CCTCATCTGCTTCCTTACCTTTGAAGGAGGATCAAGCAAGAATGTATCAAATGTCAGGTG 4777 Query 4750 GT-TCTCTCAAGAGGAAGGAACCAGATGGTGGATGGGATGGATATAAGCAATCCTCATGG 4808 || | ||| |||||||| ||||| || || |||||||||||||||| ||| ||||||||| Sbjct 4778 GTGT-TCTGAAGAGGAAAGAACCGGAAGGAGGATGGGATGGATATAGGCAGTCCTCATGG 4836 Query 4809 CAATAACAA-ACCTCAGAATCTC 4830 |||||||| | ||||||||||| Sbjct 4837 CAATAACAGTAGCTCAGAATCTC 4859 Score = 411 bits (222), Expect = 4e-113 Identities = 941/1271 (74%), Gaps = 118/1271 (9%) Strand=Plus/Plus Query 1556 AGCTGGGCTGAGCAGGAGCTTTTCATCGCATA-GAACTG-CAACTTCGGAGAAAGTTTCT 1613 |||||| |||| || ||||| ||||| || | ||| || | |||| |||||| ||||| Sbjct 1740 AGCTGGTTTGAGTAGAAGCTTCTCATCACACAGGAA-TGTC-CCTTCTGAGAAAATTTCT 1797 Query 1614 CAATCAACTCTGGCACCTGAAAAGACT-TGTGACGTACCGATGGCTGAAGGTTTCAGTAA 1672 ||||||| | || || ||||||||||| | ||| || || || |||| |||| | |||| Sbjct 1798 CAATCAAGTTTGACATCTGAAAAGACTCT-TGAGGTTCCTCTGACTGAGGGTTCCGGTAA 1856 Query 1673 CAAGTTGATCGTTAAGCTGCCGAAACGTGGTCGCAGTCCGGCACAGAGTGTTAGTGGAGG 1732 || ||||| || ||||||||||| |||||||| ||||| || || ||||| |||||||| Sbjct 1857 TAAATTGATTGTGAAGCTGCCGAATCGTGGTCGAAGTCCTGCTCAAAGTGTGAGTGGAGG 1916 Query 1733 TTCCTTT-GAGGACCCTGCAGTGGGT-AATAGCAGAGCTCCATCACCTGTCCCTTCCGAG 1790 | |||| || ||||||||| ||| |||||||||| | | |||||||| | | | | | Sbjct 1917 CT-CTTTGGAAGACCCTGCA-CCGGTGAATAGCAGAGTTTCTTCACCTGTGCATGCGGTG 1974 Query 1791 AAGCATGATCAATTTGACCGA-AACGTGAAAGAAATGAATGATACATATCGAGCTAACT- 1848 ||||| || | || ||| | | |||| || ||||| ||| || | |||||| |||| | Sbjct 1975 AAGCAGGAACTATGTGA-CAATAACGGGAGAGAAAAAAATCATTCTTATCGACCTAA-TG 2032 Query 1849 TTAGCCCTGATGC-T-AATACTGAATCTTCGCAAAACAATGACCTTAAAA-ATCTATCGA 1905 | ||| ||| | | | ||| |||| |||| ||||| |||||| |||||| || | | || Sbjct 2033 TGAGCTCTG-T-CTTGAATGCTGAGTCTTGGCAAAGCAATGA-ATTAAAAGATATTTTGA 2089 Query 1906 CAGTTTCAG-ATGAGGTAGCTGGTTC-CC-CTTCTGTTAATGCTGGTGGTGAGCATGGCA 1962 ||| || | | |||| ||||||||| || | | || | |||||||| ||||| || | Sbjct 2090 CAGGCTC-GCAAGAGGCAGCTGGTTCACCAC-T-TG-T--TGCTGGTGATGAGCGCGG-A 2142 Query 1963 -AGGCTGTTAATGATTCTAG-TAAAGTAGT-AGGGAATGCCAAACCCACTTCTCCTACTC 2019 || | |||| |||||| | ||||| | | ||||||| ||| ||| ||| | || Sbjct 2143 GGGGATCTTAAGGATTCT-GATAAAGCA-TCTGGGAATGTTAAAGGCACATCT--TCCT- 2197 Query 2020 TAGGAGATGACGTCCAAA-CTGAAAAAAGGCATTGTGGATCACACAGCTCTATGAATGCC 2078 ||||| |||| || |||| ||| | | |||||| | ||| ||| ||| || |||||||| Sbjct 2198 TAGGAAATGA-GTTCAAATCTGGAGAGAGGCATGGCGGAACACTCAGTTCGATGAATGCT 2256 Query 2079 TTGATTGAAAGTTGTGTCAGGGACTCTGAGACAAATGCGTGTATGGCTGGTGCGGATGAT 2138 |||||||||||||||||||| |||||||||| ||||| | | |||||||| |||||||| Sbjct 2257 TTGATTGAAAGTTGTGTCAGATACTCTGAGACGAATGCCTCTTTGGCTGGTTCGGATGAT 2316 Query 2139 GTTGGAATGAATCTTCTAGCTACTGTAGCTGCTGATGAAATGTCCAAATCCCCTGTTGCA 2198 ||||||||||||||||| |||| ||| ||||||||||| ||||| ||||| ||||||||| Sbjct 2317 GTTGGAATGAATCTTCTTGCTAGTGTTGCTGCTGATGAGATGTCTAAATCGCCTGTTGCA 2376 Query 2199 TCACCCTCTGTATC-CAGGGTTTCAGATTCCTTGATGAATG-ATA-GCT-CCATA-GCAC 2253 || ||||| ||||| || | | || ||||| ||||||||| | | || | || | | Sbjct 2377 TCTCCCTCAGTATCTCA-GCCTCCAAATTCCGTGATGAATGAAAATTCTACTGTAGGGA- 2434 Query 2254 CACGAATCACAAA--T--T--CTTTGGATGGCTTACCTCGCGAACAAGC-TGAACCT-AT 2305 || ||| ||||| | | ||| ||||||||| |||| ||| ||| | | || || | Sbjct 2435 -AC-AAT-ACAAAGCTAATGGCTTCGGATGGCTTGCCTCACGAGCAA-CATCAAGCTGTT 2490 Query 2306 TGCCAAGAATCCCATGGT--TGA--TA-TTGAGCAACATGTCAATAGTAGTGGTGA-GCA 2359 || | | || || ||| | |||||||||||| | |||||||| | || Sbjct 2491 TG-TACCTCTGTCA--GTACTGAGCAAGGTGAGCAACATGTTAGCAGTAGTGG-CACACA 2546 Query 2360 GTTGCCGGCTTTGGAGAAT-GTGAATGATTCTAAG-CCGGGAGATCTTGATGAGAACTCC 2417 ||| || | || ||| ||||| |||||| || ||||||| |||| ||| || | Sbjct 2547 GTT---GGAGTCAGA-AATAAAAAATGAATCTAAGACC-GGAGATCGTGATAAGAGCT-C 2600 Query 2418 G-ACTCAGA-AATCGAAGAAT-TGCAAAGGTTGGTGGATCAGTGCTTAGAGAGCAATGAA 2474 | | ||||| | | |||| || ||||||||||||||||||||||||||||||||||||| Sbjct 2601 GAATTCAGACACT-GAAG-ATCTGCAAAGGTTGGTGGATCAGTGCTTAGAGAGCAATGAC 2658 Query 2475 AATTCAGATGATGTTGTTGCTCCAAGTACTGTGGCCAC-AACAGGCATTGGAG-AAAACA 2532 |||||||||| |||||||||| | | || | |||| || || | || || |||| | Sbjct 2659 AATTCAGATGGTGTTGTTGCTTCGCCTGCTTTACCCACTAA-AGCCGTTA-AGGAAAAGA 2716 Query 2533 TGTCTGA-TGATAGTGA-TAGTGGGGTAGTTA-GTGACCTAAAGACTGATGTTGCATCAG 2589 | | ||| ||||||||| | ||||| | | | | || |||||||||||||| ||||| Sbjct 2717 TTT-TGAATGATAGTGACTC-TGGGGAACTGAAG-GATATAAAGACTGATGTTAAATCAG 2773 Query 2590 AGACAGAACG-AG-TGGCAGA-TACAACGAAGAAGAC-AGGAAACTCTTTGTTAAGTGAA 2645 || | || | | | | || | ||||||| |||| || || ||| || ||| ||| Sbjct 2774 AGGCTGATTGCACAT--CTGACT-CAACGAA-AAGAGTAGCAAGCTCAATGCTAACCGAA 2829 Query 2646 TGTAAAGCCATTGGCAGATGTCAGAATGCAGATTCTTTGGTTGCTGAACATTCACACCC- 2704 |||| || || | | | || | || | ||||||| ||| || |||||| || ||| Sbjct 2830 TGTAGAG--AT-GT-A-A-GTAAAAAGGTAGATTCTGTGGCTGTTGAACAG--ACTCCCT 2881 Query 2705 -GGACGTTGTTGGTGAT-AGTACGAAAGAAGAGAAACCG--AA-GGTGATAGTGAGTTCT 2759 ||| | ||||| |||| | || ||||||||||||||| || || | | |||||||| Sbjct 2882 TGGAAGGTGTTGATGATGA-TAAGAAAGAAGAGAAACCCCCAACGGCG-T--TGAGTTCT 2937 Query 2760 GAGCTTGTTAA 2770 ||||| ||||| Sbjct 2938 GAGCTAGTTAA 2948 > AT3G48060.1 | Symbols: | BAH domain ;TFIIS helical bundle-like domain | chr3:17743114-17748736 REVERSE LENGTH=5250 Length=5250 Score = 1212 bits (656), Expect = 0.0 Identities = 1274/1564 (81%), Gaps = 75/1564 (5%) Strand=Plus/Plus Query 1 GGAGAAGATGAAAGAAGGCTATGCATGGGAGGGTTTGTCAGGTTGATGAGAGGAAGAAGA 60 ||||||||||| |||||||||||||||||||||||||| | | | |||| | | | Sbjct 275 GGAGAAGATGATAGAAGGCTATGCATGGGAGGGTTTGT---G-AG-CG-GAGGCA-CA-A 326 Query 61 AAGGTCATCGTCGGCTTATGTTTAGA-CCTCCTTCTCGTGTAATTTCGAGC-GTCCACGc 118 || ||| |||||||| ||||| | | | ||| |||||||||||| ||| | || | | Sbjct 327 AA-GTCGTCGTCGGCACATGTTGATATCTTCC-TCTCGTGTAATTGCGA-CTGTGGAAGG 383 Query 119 ttcttgttcttcgtctctctccatt-tcttcttctacttccttttctAAGGACGGACGCA 177 | | ||||||| | | | ||| || ||||| ||||| || |||||||||||||| |||| Sbjct 384 TGGTGGTTCTTCTTGTTTGTCC-TTATCTTCATCTACCTCGTTTTCTAAGGACGGGCGCA 442 Query 178 GAATTAGTGTTGGTGACTCTGCTCTCTTTAAACCACCGCAGGATTGCCCACCGTTTATTG 237 ||||||||||||||||| |||||| ||||| ||||| |||||||| |||||||| |||| Sbjct 443 AAATTAGTGTTGGTGACTGTGCTCTGTTTAAGCCACCACAGGATTGTCCACCGTTCATTG 502 Query 238 GTTTGATTCGCTTGGTCATTCCTGAGAAAGAAGGCAAGTTTAAGCTGCGTGTGAATTGGC 297 | | ||||||||| ||||| ||||| |||||| ||||| ||| || |||| ||||||| Sbjct 503 GGATAATTCGCTTGATCATTGCTGAGGAAGAAGATAAGTTGAAGTTGGGTGTTAATTGGC 562 Query 298 TGTATCGACCTGCGGAATTGAAGCTTGGCAAAGGCATCCTTTTGGAGGCTCAGCCTAACG 357 | |||||||| | ||||| || ||||||||||| |||||| | |||||| |||| |||| Sbjct 563 TTTATCGACCCACTGAATTAAAACTTGGCAAAGGTATCCTTCTAGAGGCTGAGCCGAACG 622 Query 358 AAATCTTTTATTCCTTTCACGAGGATGAGATACCGGCTGCATCCTTATTGCATCCGTGTA 417 || ||||||||||||||||||||||| | ||||| || ||||| ||| |||||||||||| Sbjct 623 AACTCTTTTATTCCTTTCACGAGGATAATATACCTGCAGCATCTTTACTGCATCCGTGTA 682 Query 418 AAGTTACCTTTCTTCCAAGAGGCGTTGAATTGCCATCTGG-AGTC-TCTTCATTCGTGTG 475 ||||| |||| ||||||||||| |||||| |||||||||| | || | || || ||||| Sbjct 683 AAGTTGCCTTCCTTCCAAGAGGTGTTGAACTGCCATCTGGTA-TCAGC-TCGTTTGTGTG 740 Query 476 TTGGCGAGTTTATGATGTTATGAATGATTGCATT-TGGTGGCTGACTGATCAAAACTATA 534 | |||||||||| || |||| || || || || |||||||||||||||||| |||||| Sbjct 741 TCGGCGAGTTTACGACGTTACAAACGAGCGC-TTATGGTGGCTGACTGATCAAGACTATA 799 Query 535 TAGATGAACGGCAACAAGAAGTAGATAAGTTATTGTGTAAGACTCGCTCCGAGATGCATA 594 | ||||| || |||| ||||||||| |||||||||||||||||||| || || ||||||| Sbjct 800 TTGATGATCGACAACTAGAAGTAGACAAGTTATTGTGTAAGACTCGTTCAGAAATGCATA 859 Query 595 CCACACT--A-CAGGGTGGTCGTTCTCC-TAG--GATGAATAGTCCGACAACATCGCAAG 648 | ||| | | ||||||||||||||||| || ||||||||||| |||||||| ||| Sbjct 860 CAACATTACAGCAGGGTGGTCGTTCTCCAAAGTCCATGAATAGTCCAACAACATCACAAC 919 Query 649 TGAAAGCTGGGGCAGATGGCATGCAGAACAGTAACTC-CTTTTCTTCACAGGGTAAGGGA 707 | || ||||||||| ||||||| ||||| |||||| || ||| |||||||| Sbjct 920 CG-AA--------AGATGGCATCCAGAACAACAACTCTCTTTTC-TCTCAGAGTAAGGGA 969 Query 708 AGGAAGAGAGAGCGTGCT-GATCAGGGTTCCGAATCTGTGAAACGGGAACGTCCAAGTCG 766 ||||| ||||||||| | ||||| ||||| || ||||| |||||||||||| | ||||| Sbjct 970 AGGAAAAGAGAGCGT-ATGGATCATGGTTCTGAGTCTGTTAAACGGGAACGTTCTAGTCG 1028 Query 767 GGTTGATGATAGTGGTTCTGGTTTCCTAAGAACAGAAAGCAGTTTGAA-ATCTGAGATTG 825 || ||||| |||||||| ||| ||| ||||| |||||| |||| || ||||||||| Sbjct 1029 AGTAGATGACAGTGGTTCCGGTCCCCTCAGAACCGAAAGCGGTTT-AACGTCTGAGATT- 1086 Query 826 CTAAAA-TTACAGAAAAAGGCGGGCTAGTTGACTCTGATGGGGTTGAGAGATTGGTGCAG 884 ||||| ||||||| ||||| || || || || ||||| || ||||| | |||||| ||| Sbjct 1087 TTAAAATTTACAGAGAAAGGTGGTCTGGTGGATTCTGAAGGAGTTGAAAAATTGGTTCAG 1146 Query 885 CTCATGCTGCCTGAGAGAAATGAGAAGAAAATAGACTTGGTTTGCCGAT-CAATTCTTGC 943 ||||||||||||||||| ||||| |||||||||||||| ||| |||| | | |||||||| Sbjct 1147 CTCATGCTGCCTGAGAGGAATGAAAAGAAAATAGACTTAGTTGGCCG-TGCGATTCTTGC 1205 Query 944 AGGTGTT-GTAGCAGCAACAGACAAGTTTGATTGCCTCAGTCGTTTTGTCCAGCTCAGGG 1002 ||| ||| |||||||| ||| ||| |||||||||||| |||||||||||||||||||||| Sbjct 1206 AGG-GTTTGTAGCAGCGACAAACAGGTTTGATTGCCTTAGTCGTTTTGTCCAGCTCAGGG 1264 Query 1003 GATTACCTGTTTTTGATGAGTGGCTACAGGAAATTCATAAAGGGAAAATTGGGGATGCGA 1062 ||||||| || |||||||||||||| |||||| |||||||||||||| ||||||||| | Sbjct 1265 GATTACCCGTGTTTGATGAGTGGCTGCAGGAAGTTCATAAAGGGAAAGTTGGGGATGGGG 1324 Query 1063 GCAGTCCCAAAGATAATGATAGA-TCAGTGGACGATTTTCTCTT-GATCTTACTTCGTGC 1120 ||||||||||||| | |||||| | ||| |||||||| ||||| | |||||||||| || Sbjct 1325 GCAGTCCCAAAGACAGTGATAGGCT-AGTAGACGATTTCCTCTTAG-TCTTACTTCGGGC 1382 Query 1121 TCTTGATAAGCTACCTGTGAATCTCAATGCTCTACAGACTTGTAACATAGGAAAGTCTGT 1180 ||||||||||||||| ||||||||||| || || |||||||||||||| ||||||||||| Sbjct 1383 TCTTGATAAGCTACCGGTGAATCTCAACGCGCTTCAGACTTGTAACATTGGAAAGTCTGT 1442 Query 1181 TAACCATTTGCGATCACATAAGAACTCAGAAATTGGGAAAAAGGCAAGGAGCTTGGTTGA 1240 ||| ||| | || |||||||| || ||||| ||||||||||| ||||||||||||||||| Sbjct 1443 TAATCATCTACGCTCACATAAAAATTCAGAGATTGGGAAAAAAGCAAGGAGCTTGGTTGA 1502 Query 1241 TACGTGGAAGAAACGTGTTGAGGCAGAAATGGATGCAAAGTCTGGATCCAATCAGGGTAC 1300 || ||||||||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct 1503 CACTTGGAAGAAACGAGTTGAGGCAGAAATGGATGCGAAGTCTGGATCCAACCAGGGTGT 1562 Query 1301 ATCTTGGCCTGGAAGACCTCGTCAGTCTGAAGTTTCTCATGGGGGTAGACATTCAGGTG- 1359 || ||||||||||||| | | |||| | | ||||| || |||||||||| Sbjct 1563 TTCCTGGCCTGGAAGAC-T-G--AGTC--A--T-------GGGGGAAGGCATTCAGGTGG 1607 Query 1360 TATCTGCTGATGCAA-CAAAGACATCAACATCACATCTACATCCTTCTAAGTCCGTGTCC 1418 | || || || |||| ||| ||||||| ||||||| |||||| |||||||||| || || Sbjct 1608 T-TCCGCGGAGGCAAACAA-GACATCATCATCACACCTACATGCTTCTAAGTCTGTCTCG 1665 Query 1419 GTCAAA-ATACCG-TCAGAAAACAGCATGAAGTCTGCAACTACATCTCCAAGTTCTACTA 1476 |||||| | || | | ||||||| | |||||| || | | || || ||| | || || | Sbjct 1666 GTCAAACA-ACAGGTG-GAAAACAACCTGAAGTGTGTAGCCACGTCGCCAGGCTCCACAA 1723 Query 1477 GATCAGCCCCATCACCTGGAACAGGTGTTTCGGTTGCTAATGATGGGCAGCAAAGAAATA 1536 ||||||| || || || ||| |||||| | ||| |||| ||||| ||||| ||||| Sbjct 1724 GATCAGCTCCTTCTCCGGGATCAGGTGGTAATGTTTCTAAAGATGGACAGCAGCGAAATG 1783 Query 1537 CTGG 1540 |||| Sbjct 1784 CTGG 1787 Score = 601 bits (325), Expect = 2e-170 Identities = 749/948 (79%), Gaps = 51/948 (5%) Strand=Plus/Plus Query 3897 CTTGATCTAAACAAACTTGATGATCCGACTGATATGAATAATTACACAAT-AAGCAGCGG 3955 ||||||||||||||| |||||||| ||||||||||| | |||||||| || ||| | Sbjct 4216 CTTGATCTAAACAAAGTTGATGATTTAACTGATATGAACAGCTACACAATGAA-CAGTAG 4274 Query 3956 TCATCGGGTAGACTCATCTTTTCAACAAG--CAA--A-C-TTTTCTGGTGGTCGTAGAGA 4009 ||||||| |||| ||||||||||| || | || | | | |||||||||||||||| Sbjct 4275 TCATCGGCTAGATTCATCTTTTCAGCAGGTTAAATTACCATCGACTGGTGGTCGTAGAGA 4334 Query 4010 TTTTGATTTAAACGATGGACCCGCTGT-TGATGATTCGAG-TGTTGAGTCATCTATGGTT 4067 |||||||||||| |||||||| | || ||||||| | || ||||||| |||| |||||| Sbjct 4335 TTTTGATTTAAATGATGGACCTG-TGGGTGATGATGC-AGCTGTTGAGCCATCGATGGTT 4392 Query 4068 TTTACTCAACATTCCCGAAATGGCTTGACATCACAGCCAA-TGATCTCTGGAATAAGAAT 4126 | | ||||||||| |||| ||||||| ||||||| ||| | |||||||||| || | Sbjct 4393 CTAAATCAACATTCACGAAGTGGCTTGCCATCACAACCATCTC-TCTCTGGAATTCGAGT 4451 Query 4127 GAATGGTGAACACATGGC-AGCTGGCTTCTCATCTTGGTTTCCTGCTGCTAACAATTATT 4185 |||||| ||| ||||||| || | |||||| |||||||||||||||||||| ||||| Sbjct 4452 GAATGGCGAAAACATGGCTAG-T---TTCTCAACTTGGTTTCCTGCTGCTAACGCTTATT 4507 Query 4186 CAGCAATGAGTATTCCTC-AAGTCTTGCCTGATCGAGGCGATCACCCTTTTCCAGTTATT 4244 |||| |||| || |||| || | | |||||| |||| ||||| ||||||||| | ||| Sbjct 4508 CAGCTGTGAGCATGCCTCCAATTAT-GCCTGAGAGAGGTGATCAGCCTTTTCCAATGATT 4566 Query 4245 ACAAG-CAATGGACCACAGAGGATGGTGGGTCCAACATCCGGAGTTTCATCATTTACACC 4303 | | | ||| |||||||| ||| ||||||||||| | || ||||| |||||| | || Sbjct 4567 GCCACTCG-TGGCCCACAGAGAATGTTGGGTCCAACAACTGGTGTTTCCTCATTTTCCCC 4625 Query 4304 TGATATG-TACAGAGGCCCAGTTTTG-CTATCTTCTCCGGC-AGTTTCATTCCCGCCCAC 4360 ||| | | ||||| || || |||||| | || ||||| || | | |||| | | |||| Sbjct 4626 TGA-AGGGTACAGGGGTCCTGTTTTGTCG-TCGTCTCCAGCCA-TGCCATTTCAGTCCAC 4682 Query 4361 AGCATTTCAGTATCCCG-CGTTTCCTTTTGGAACCAGTTTTCCTC-TTGCCTCAGCAAAT 4418 | | || |||||||| | | ||||||||||||| || || || | || || |||| ||| Sbjct 4683 AACGTTCCAGTATCCTGTC-TTTCCTTTTGGAAATAGCTTCCC-CGTTACCCCAGCGAAT 4740 Query 4419 TTTCCAGGCT-CTTCGACTCCATACATGGACTCTTCATCAAGTGGCAG-GCTTTGTTTCC 4476 || || || | |||| || || ||||||| ||||| ||||| || || |||| || || Sbjct 4741 TTCCCTGG-TGCTTCTACAGCACACATGGATTCTTCTTCAAGCGGGAGAGCTTACTT-CC 4798 Query 4477 CCCCTGTCAACTCTCAAATATTGGGTCCAGGAGTTGCCA-TCCCGTCTAATTATCCAAGG 4535 || |||||||||||||||||||||||| |||||| ||| | ||||||||||| ||||| Sbjct 4799 CCGGTGTCAACTCTCAAATATTGGGTCCTGGAGTT-CCAGTTCCGTCTAATTACCCAAGA 4857 Query 4536 CCTTATGTTGTAAACCTCCCAAACGGT---AGCAATGGAGGAGTTTCGGACAACAACAGT 4592 |||||| | || ||||||||||||| |||||||| || |||| |||||| | | | Sbjct 4858 CCTTATATAGTTGGCCTCCCAAACGGTGGTAGCAATGGCGGTGTTTTGGACAATAGC-GC 4916 Query 4593 GCAAAATGGTTTAGATCAGGTCTTGACTTAAATTCCGGACCAGGAGGGCATGAAACTGAT 4652 | ||| |||||||| ||||| |||||||||||||| || || ||||| |||||||| || Sbjct 4917 G-AAA-TGGTTTAGGTCAGGACTTGACTTAAATTCTGGTCCTGGAGGTCATGAAACAGA- 4973 Query 4653 GGGA-GAGATGAAGCAGCACTTGTA-CAAAGACAATTATCTTCCTCAGGTTCCTTACCTT 4710 |||| |||| ||| || |||||||| ||| | ||||||||||| || | |||| |||| | Sbjct 4974 GGGAAGAGACGAATCAACACTTGTATCAAGG-CAATTATCTTCATCTGCTTCCGTACCGT 5032 Query 4711 TGAAAGATGATCAGGCAAGAATGTATCAGATGTCAGGTGGT-TCTCTCAAGAGGAAGGAA 4769 ||| || ||||| |||||||||||||| |||||||||||| | ||| |||||||| ||| Sbjct 5033 CGAAGGAGGATCAAGCAAGAATGTATCAAATGTCAGGTGGTGT-TCTGAAGAGGAAAGAA 5091 Query 4770 CCAGATGGTGGATGGGATGGATATAAGCAATCCTCATGGCAATAACAA 4817 || || || |||||||||||||||| ||| |||| || ||||||||| Sbjct 5092 CCGGAAGGAGGATGGGATGGATATAGGCAGTCCTTATAACAATAACAA 5139 Score = 252 bits (136), Expect = 3e-65 Identities = 250/304 (82%), Gaps = 11/304 (4%) Strand=Plus/Plus Query 3580 TTCCTGCATCCATTACTGTTGCTGCTGCTG-CAAAGGGTGCGTTTGTTCCACGTGACGAT 3638 |||||||||||||||||||||||||||| | |||||| | |||||||||||| ||| ||| Sbjct 3839 TTCCTGCATCCATTACTGTTGCTGCTGCCGTCAAAGG-TCCGTTTGTTCCACCTGAAGAT 3897 Query 3639 TTGTTGAGAAACAAAGCAACTGTTGGCTGGAGAGGATCTGCCGCCACTAGCGCCTTCCGG 3698 |||||||| | |||| ||||||| |||||||||||||| |||||||| |||||||| Sbjct 3898 CTGTTGAGATATAAAGGGGCTGTTGGTTGGAGAGGATCTGCTGCCACTAGTGCCTTCCGC 3957 Query 3699 CCAGCTGAGCCAAGAAAAA-TGCAGGAGGTGGTGCCACT-AGGCATGAATAATGTGTCTT 3756 |||||||||||||||||| | ||||| ||| | ||| || ||| || ||| ||| Sbjct 3958 CCAGCTGAGCCAAGAAAAGCT-CAGGATGTGTT---ACTGAG-CATTAACAATACCTCTA 4012 Query 3757 CGTCGGATGCTTCTACAACCGCTGGCAAGCAAACAAAGACGTTTTTGGACTTTGACCTAA 3816 | || ||||| ||||| | |||||||| || |||| ||||||| |||| |||||| | | Sbjct 4013 CATCTGATGCATCTACTTCTGCTGGCAAACAGACAAGGACGTTTCTGGATTTTGACTTGA 4072 Query 3817 ATGTACCCGATGAGAGAGCTC-TTGAAGATCTAGCTTCCCAAAGATCAGCCAATCCCACA 3875 ||||||| || ||||||| || |||||||| | |||||||||||||| | ||||||||| Sbjct 4073 ATGTACCTGACGAGAGAG-TCCTTGAAGATTTGGCTTCCCAAAGATCTGGAAATCCCACA 4131 Query 3876 AATT 3879 |||| Sbjct 4132 AATT 4135 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 241152495001 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5