BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951089
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62940.1 | Symbols: HCA2, DOF5.6 | Dof-type zinc finger DNA-... 1810 0.0
> AT5G62940.1 | Symbols: HCA2, DOF5.6 | Dof-type zinc finger DNA-binding
family protein | chr5:25256919-25258681 REVERSE LENGTH=1560
Length=1560
Score = 1810 bits (980), Expect = 0.0
Identities = 1102/1159 (95%), Gaps = 16/1159 (1%)
Strand=Plus/Plus
Query 18 CACCAAATGGGTCTCACTTCTCTTCAAGTTTGCATGGATTCTGATTGGCTCCAGGAAGCT 77
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 172 CACAAAATGGGTCTCACTTCTCTTCAAGTTTGCATGGATTCTGATTGGCTCCAGGAATCC 231
Query 78 GAGTCATCAGGAGGAAGCATGCTAGACTCTTCAACGACTTCTCCATCAGCAGCCGACATA 137
||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||
Sbjct 232 GAGTCATCAGGAGGAAGCATGTTAGACTCTTCAACGAATTCTCCGTCAGCAGCCGACATA 291
Query 138 CTAGCTGCTTGTGGCACTAGACCACAAGCCTCGGCCGTGGCTGTAGCCGCTGCGGCGCTG 197
||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 292 CTAGCAGCTTGCAGCACTAGACCACAAGCCTCGGCCGTGGCTGTAGCCGCTGCAGCTCTG 351
Query 198 ATGGACGGTGGAAGGAGGCTGCGTCCACCTCACGACCATCCTCAAAAGTGTCCTCGTTGC 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ATGGACGGTGGAAGGAGGCTGCGTCCACCTCACGACCATCCTCAAAAGTGTCCTCGTTGC 411
Query 258 GAGTCAACACACACTAAGTTCTGTTACTACAATAACTATAGCCTCTCTCAGCCTCGTTAC 317
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 412 GAGTCAACACATACTAAGTTCTGTTACTACAATAACTACAGCCTCTCTCAGCCTCGTTAC 471
Query 318 TTCTGCAAGACTTGTCGCCGTTACTGGACCAAAGGCGGCACTCTAAGGAATATTCCGGTC 377
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 472 TTCTGCAAGACTTGTCGCCGTTACTGGACAAAAGGCGGAACTCTAAGGAATATTCCGGTT 531
Query 378 GGTGGTGGATGCCGTAAAAACAAGAAACCATCTTCCTCTAATTCCTCC-CCATCCACTTC 436
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 532 GGTGGTGGATGCCGTAAAAACAAGAAACCATCTTCCTCTAATTCCTCCTCC-TCCACTTC 590
Query 437 TTCCGGCAAAAAACCATCCAACATCGTTACCACTAATACCACTGATCTTATGGCTTTAGC 496
||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct 591 TTCCGGCAAAAAACCATCCAACATCGTTACCGCCAATACCTCTGATCTTATGGCTTTAGC 650
Query 497 ACATTCTCATCAAAATTACCAAAACTACCAAAATTCCCCTCTAGGGTTTTCACATTTTGG 556
|||||||||||||||||||| | | | |||| |||||||||||||||||||||||
Sbjct 651 ACATTCTCATCAAAATTACC---A--A-C---ATTCTCCTCTAGGGTTTTCACATTTTGG 701
Query 557 TGGGATGATTGGGTCTTACTCAACTCCGGAGCATGGTAACGTTGGTTTCTTGGAGAGCAA 616
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TGGGATGATGGGGTCTTACTCAACTCCGGAGCATGGTAACGTTGGTTTCTTGGAGAGCAA 761
Query 617 GTATGGGGGTTTGCTTTCGCAGAGCCCTAGACCTATTGATTTCTTGGACAGTAAGTTTGA 676
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GTATGGCGGTTTGCTTTCGCAGAGCCCTAGACCTATTGATTTCTTGGACAGTAAGTTTGA 821
Query 677 TCTCATGGGAGTGAACAATGACAACCTGGTCATGGTTGATCATGGAAGTAACGGAGATCA 736
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 822 TCTCATGGGAGTGAACAATGACAACCTGGTCATGGTTAATCATGGAAGTAACGGAGATCA 881
Query 737 TCGTCATCAT-AGTAATCATCACATGGGTCTGAATCACGG-GTTAGGTCTTAATAACAAC 794
|| ||||||| | ||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 882 TCATCATCATCA-TAATCATCACATGGGTCTGAATCACGGTGT-AGGTCTTAACAACAAC 939
Query 795 AGCAACAATGGTGGATTTAATGGGATTTCTCCGGGAGGCAATGGAAATGGTGGTGGTCTC 854
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 940 AACAACAATGGTGGATTTAATGGGATTTCTACGGGAGGCAATGGAAATGGTGGTGGTCTC 999
Query 855 ATGGATATATCGACATGCCAAAGACTTATGCTATCTAATTATGACCATCATCATTATAAT 914
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1000 ATGGATATATCGACATGCCAAAGACTTATGCTATCTAATTATGATCATCACCATTACAAT 1059
Query 915 CATCAAGAAGATCATCAAAGGGTAGCAACAATAATGGGTGTGAAGCCAAATGCGAAGTTG 974
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1060 CATCAAGAAGATCATCAAAGGGTAGCAACAATAATGGATGTGAAGCCAAATCCGAAGTTG 1119
Query 975 TTATCGCTTGATTGGCAGCAAGATCAAGGCTACTCAAATGGTGGTGGTAGTGGAAGCGTA 1034
||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||| |
Sbjct 1120 TTATCGCTTGATTGGCAGCAAGATCAATGCTACTCCAATGGTGGTGGTAGCGGAGGCGCA 1179
Query 1035 GGAAAATCTGACGGTGGTGGATACGGCAGTGGTGGTTATATCAATGGTTTAGGTTCGTCG 1094
|||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1180 GGAAAATCCGACGGTGGTGGATACGGCAATGGTGGTTATATCAACGGTTTAGGTTCGTCG 1239
Query 1095 TGGAATGGTTTGATGAATGGCTATGGATCGTCCACTAAAACAAACTCCTTGGTTTGATAA 1154
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1240 TGGAATGGTTTGATGAATGGCTATGGAACGTCCACTAAAACAAACTCCTTGGTTTGATAA 1299
Query 1155 GTTAATCAGAACTT-TTTT 1172
|||||||||||||| ||||
Sbjct 1300 GTTAATCAGAACTTCTTTT 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57529824570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5