BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951091
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62960.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1816 0.0
> AT5G62960.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G10660.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr5:25269282-25271641 FORWARD LENGTH=1314
Length=1314
Score = 1816 bits (983), Expect = 0.0
Identities = 1052/1085 (97%), Gaps = 6/1085 (1%)
Strand=Plus/Plus
Query 1 AAAAACTGAAACTTTTTCAAAATGGCT-TCATCGTCTTCATCATTGTTATCTCCATCTTC 59
||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 142 AAAGACTGAAACTTTATCAAAATGG-TCTCATCGTCTTCATCATTGTTATCTCCATCTTC 200
Query 60 ATATACAGAGTTAAAAGATGCTTGGCATCCATCAACAACAGCGAACACAACAGAATCAAG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 ATATACAGAGTTAAAAGATGCTTGGCATCCATCAACAACAGCGAACACAACAGAATCAAG 260
Query 120 CTACTGGTTTAATTGGAGGGTTATGATCTGCTGCATATGGATGGCTATAGCGACTGTGAT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CTACTGGTTTAATTGGAGGGTTATGATCTGCTGCATATGGATGGCTATAGCGACTGTGAT 320
Query 180 CACAGCTTTTCTTATATTCAAATACGAGGGCTTTCGTCGGAAACGAAGTGACGGTGGTGA 239
||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 321 CACAGCTTTTCTTATATTCAAATACGAAGGTTTTCGTCGGAAACGAAGTGACGTTGGTGA 380
Query 240 CGTCGACGGAGGAGAGAAAGAGTGGTCGGGAAATGTATATGAAGACGAGACATGGAGGCC 299
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AGTTGACGGAGGAGAGAAAGAGTGGTCGGGAAATGTATATGAAGACGAGACATGGAGGCC 440
Query 300 TTGTCTTCGTAATATTCACCCAGCTTGGCTTCTTGCGTTTA-GAGTTGTTGCCTTCTTCG 358
|||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 441 TTGTCTTCGTAATATTCATCCAGCTTGGCTTCTTGC-TTTCCGAGTTGTTGCCTTCTTCG 499
Query 359 TTCTTCTTGTTATGTTGATTGTTATTGGCCTTGTTGATGGACCTACCATCTTCTTCTACT 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 500 TTCTTCTTGTTATGTTGATTGTTATCGGCCTTGTTGATGGACCTACCATCTTCTTCTACT 559
Query 419 ACACACAGTGGACATTTGCTCTGATCACTCTCTATTTCGGATTAGGCTCGCTTCTTTCGC 478
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 560 ACACACAGTGGACTTTTGGTCTGATCACTCTCTATTTCGGATTAGGCTCGCTTCTTTCTT 619
Query 479 TGCACGGATGTTACCAATACAACAAAAGAGCAGCTGGTGATAGAGTAGATAGCATTGAAG 538
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 620 TGCACGGATGTTACCAATACAACAAAAGAGCAGCTGGCGATAGAGTAGATAGCATTGAAG 679
Query 539 CCATAGACTCAGAGAGAGCAAGATCCAAAGGAGCTGATAATACTATTCAACAGAGCCAAT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 680 CCATAGACTCAGAGAGAGCAAGATCCAAAGGAGCTGATAATACTATTCAACAGAGTCAAT 739
Query 599 ACTCTAGTAATCCAGCTGGTTTTTGGGGATATGTTTTCCAGATAATCTTTCAGATGAATG 658
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 740 ACTCTAGTAATCCAGCTGGTTTTTGGGGATATGTTTTCCAGATTATCTTTCAGATGAATG 799
Query 659 CAGGTGCAGTTTTGCTCACGGACTGTGTCTTCTGGTTCATCATTGTTCCTTTCCTTGAGA 718
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CAGGTGCAGTTTTGCTTACTGACTGTGTCTTCTGGTTCATCATTGTTCCTTTCCTTGAGA 859
Query 719 TCCATGATTATAGCCTCAATGTTCTGGTGATCAACATGCACTCTCTTAACGCGATTTTCT 778
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 860 TCCATGATTATAGCCTCAATGTTCTGGTGATCAACATGCACTCTCTTAATGCGATTTTCT 919
Query 779 TGCTTGGTGATGCTGCATTGAATTCTCTGAGCTTTCCATGCTTTAGAATTGCTTACTTCT 838
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 920 TGCTTGGTGATGCTGCATTGAATTCTCTGAGCTTTCCATGCTTCAGAATTGCTTACTTCT 979
Query 839 TCTTCTGGACAATAGCTTATGTTATATTCCAATGGGCCCTCCACTCCTTAGTCCATATAT 898
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TCTTCTGGACTATAGCTTATGTTATATTCCAATGGGCCCTCCACTCCTTAGTCCATATAT 1039
Query 899 GGTGGCCTTACCCATTCCTGGACTTATCATCACACTATGCTCCACTATGGTACTTCTCAG 958
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 GGTGGCCTTACCCATTCTTGGACTTATCATCACACTATGCTCCACTATGGTACTTCTCAG 1099
Query 959 TGGCAGTGATGCATTTGCCATGCTATGGAGCCTTTGCTTTGTTGGTGAAGCTAAAACATC 1018
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1100 TGGCAGTGATGCATTTGCCATGCTATGGAGCCTTTGCCTTATTGGTGAAGCTAAAACATC 1159
Query 1019 GG-TTACTACAAAGATGGTTTCCTGAGTCTTACCAGAGTCCTCGGTAGTAGCTTGCAAAG 1077
|| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1160 GGCTT-CTACAGAGATGGTTTCCTGAGTCGTACCAGAGTCCTCGGTAGTAGCTTGCAAAG 1218
Query 1078 CAAGC 1082
|||||
Sbjct 1219 CAAGC 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53162377155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5