BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951098

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63030.1 | Symbols:  | Thioredoxin superfamily protein | chr...   510    3e-144


> AT5G63030.1 | Symbols:  | Thioredoxin superfamily protein | chr5:25286223-25287694 
FORWARD LENGTH=684
Length=684

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 354/392 (90%), Gaps = 3/392 (1%)
 Strand=Plus/Plus

Query  12   AGAA-AAGAAATGGGTTCTATGTTCAGTGGAAACCGATTGAATAAGGAAGAGATGGAGGT  70
            |||| ||||||||||||| |||||||||||||||||| |||  |||||||||||||||||
Sbjct  120  AGAAGAAGAAATGGGTTCAATGTTCAGTGGAAACCGAATGAGCAAGGAAGAGATGGAGGT  179

Query  71   GGTGATGAACAAGGCCAAAGAGATCGTCTCCGCGTA-CCCAGTCGTTGTCTTCAGCAAGA  129
            |||| |||||||||| |||||||||||||| || || ||| || ||||||||||||||||
Sbjct  180  GGTGGTGAACAAGGCTAAAGAGATCGTCTCTGCTTATCCC-GTTGTTGTCTTCAGCAAGA  238

Query  130  CATATTGTGGTTACTGCCAGAGGGTGAAGCAGTTGTTGACACAACTGGGAGCAAGTTTTA  189
            |||| |||||||| ||||||||||||||||||||  |||| || || ||||||| |||||
Sbjct  239  CATACTGTGGTTATTGCCAGAGGGTGAAGCAGTTACTGACGCAGCTAGGAGCAACTTTTA  298

Query  190  AAGTATTTGAGCTCGATGAGATGAGTGATGGAGGTGAGATCCAGGCAGCTCTATCAGAGT  249
            ||||| ||||||||||||| |||||||||||||||||||||||  ||||| |||||||||
Sbjct  299  AAGTACTTGAGCTCGATGAAATGAGTGATGGAGGTGAGATCCAATCAGCTTTATCAGAGT  358

Query  250  GGACTGGGCAGAGCACTGTTCCAAACGTCTTCATCAAAGGAAAACATATCGGTGGATGCG  309
            ||||||| |||| ||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct  359  GGACTGGACAGACCACAGTTCCAAACGTCTTCATCAAAGGAAACCACATCGGTGGATGCG  418

Query  310  ATAAAGTGATGGAGAGTAACAAGCAAGGCAAGCTTGTGCCTCTACTTACTGAAGCTGGTG  369
            ||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||| |
Sbjct  419  ATAGAGTGATGGAGACCAACAAGCAAGGCAAGCTTGTGCCTCTACTTACTGAAGCTGGGG  478

Query  370  CCATAGCAAATAACTCTTCTCAGCTTTGATGA  401
            | || ||| ||||||||||||| |||||||||
Sbjct  479  CTATTGCAGATAACTCTTCTCAACTTTGATGA  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19805493106


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5