BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951102

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63070.1 | Symbols:  | Ribosomal protein S19 family protein ...   776    0.0  


> AT5G63070.1 | Symbols:  | Ribosomal protein S19 family protein 
| chr5:25299178-25299660 REVERSE LENGTH=483
Length=483

 Score =  776 bits (420),  Expect = 0.0
 Identities = 462/483 (96%), Gaps = 0/483 (0%)
 Strand=Plus/Plus

Query  21   ATGGCGATCAACGAATCAGAGTTTGCCACGGCCGTGGCGGTGGCGACAAAGAAGAGAACA  80
            ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  1    ATGGCGATCAACGAACCAGAGTTTGCCACGGCCGTGGCGGTGGCAACAAAGAAGAGAACG  60

Query  81   TTCAAGAAATTCTCATTCAGAGGATTCAACGTCGATGCTCTTCTCAAAATGTCAAACGTT  140
            ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct  61   TTCAAGAAATTCTCATTCAGAGGGTTCAACGTTGATGCTCTGCTCAAAATGTCAAACGTT  120

Query  141  GATCTCGCTAAGCTCTTCAACGCTCGTGTTCGCAGAAGATTCTATAGAGGATTAAAGAAG  200
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  121  GATCTCGCTAAGCTCTTCAACGCTCGTGTTCGCAGAAGATTCTACAGAGGATTAAAGAAG  180

Query  201  AAACCTCTGATTCTGATCAAGAAGCTACGGAGGGCGAAAAAAGAAGCAAGTGATGAGAAC  260
             |||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct  181  CAACCTCTGATTCTGATCAAGAAGCTACGAAGGGCGAAGAAAGAAGCAAGCGATGAGAAC  240

Query  261  AAGAAGAAGCCTCAAGTAGTGAAAACACATCTAAGGAACATGATCATTGTCCCCGAGATG  320
            |||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  241  AAGATGAAGCCTGAAGTGGTGAAAACACATCTAAGGAACATGATCATTGTCCCTGAGATG  300

Query  321  ATTGGAAGTGTTGTCGGAGTTCACAATGGAAAGAAGTTTAATGAAATCGTGATTAAGCCT  380
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  301  ATTGGAAGTGTTGTCGGAGTGCACAATGGAAAGAAGTTTAATGAAATCGTGATTAAACCT  360

Query  381  GAGATGATTGGTCATTATCTTGCGGAGTTTTCGTTAACTTGCAAGAAGGTTAATCACTAT  440
            ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct  361  GAGATGATTGGTCATTATCTTGCGGAGTTTTCGATGACTTGCAAGAAGGTTAATCACCAT  420

Query  441  AGACCACGTATTTGTGGTTGTGGTTGTTTCCGTCGGTCCACCAGGTTTATTCCTCTCAGG  500
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  421  AGACCACGTATTTGTGGTTGTTGTTGTTTCCGTCGGTCCACCAGGTTTATTCCTCTCAGG  480

Query  501  TGA  503
            |||
Sbjct  481  TGA  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25016605206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5