BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951108
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63090.2 | Symbols: LOB | Lateral organ boundaries (LOB) dom... 979 0.0
> AT5G63090.2 | Symbols: LOB | Lateral organ boundaries (LOB) domain
family protein | chr5:25308572-25310973 REVERSE LENGTH=1085
Length=1085
Score = 979 bits (530), Expect = 0.0
Identities = 577/598 (96%), Gaps = 9/598 (2%)
Strand=Plus/Plus
Query 15 TAA-AAGAAAGAAC--ATGGCGTCGTCATCAAACTCATACAACTCACCATGCGCGGCGTG 71
||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TAAGAAGAAA-AACAAATGGCGTCGTCATCAAACTCATACAACTCACCATGCGCGGCGTG 417
Query 72 CAAGTTTCTTCGCCGGAAATGCATGCCGGGATGCATATTCGCGCCATATTTTCCACCGGA 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CAAGTTTCTTCGCCGGAAATGCATGCCGGGATGCATATTCGCGCCATATTTTCCACCGGA 477
Query 132 GGAGCCACACAAATTCGCCAACGTCCACAAAATCTTTGGAGCAAGCAACGTCACGAAGCT 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGAGCCACACAAATTCGCCAACGTCCACAAAATCTTTGGAGCAAGCAACGTCACGAAGCT 537
Query 192 CCTCAATGAGCTCCTCCCTCACCAACGTGAAGACGCAGTCAACTCCTTAGCCTATGAGGC 251
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCTCAACGAGCTCCTCCCTCACCAACGTGAAGACGCAGTCAACTCCTTAGCCTATGAGGC 597
Query 252 CGAGGCACGTGTCCGTGACCCAGTCTATGGCTGCGTCGGAGCCATCTCTTATCTCCAGAG 311
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 598 CGAGGCACGTGTCCGTGACCCCGTCTATGGCTGCGTCGGAGCCATCTCTTATCTCCAGAG 657
Query 312 ACAAGTCCATAGGCTTCAGAAGGAGCTCGACGCAGCTAATGCTGACTTGGCACATTATGG 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ACAAGTCCATAGGCTTCAGAAGGAGCTCGACGCAGCTAATGCTGACTTGGCACATTATGG 717
Query 372 TTTGTCCACATCAGCCGCCGGAACACCTGGCAACGTCGTGGACTTGGTTTTCCAGCCTCA 431
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 718 TTTGTCCACATCAGCCGCCGGAGCACCTGGCAACGTCGTGGACTTGGTTTTTCAGCCTCA 777
Query 432 GCCGCTTCCGCCGCAGCAACCGCCTCCGTTGAATCCGGTTTATAGGCTTTCGGGGGCGAA 491
|||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||| ||
Sbjct 778 GCCGCTTCCGTCGCAGCAACTGCCTCCCTTGAACCCGGTTTATAGGCTTTCGGGGGC-AA 836
Query 492 -TCCGGTGATGAGTCAGATGCCACGTAGCACCGGAGGGTCGTATGGGACTTTTCTTCCTT 550
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 837 GTCCGGTGATGAATCAGATGCCACGTGGCACCGGAGGGTCGTATGGGACTTTTCTTCCTT 896
Query 551 GGAACAATGGTCATGATCAGCAAGG---TAACATGTGAGATTTTATAAATTATGTGTA 605
||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 897 GGAACAATGGTCATGATCAGCAAGGAGGTAACATGTGAGAGTTTATAAATTATGAGTA 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29286507701
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5