BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951115
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63140.1 | Symbols: ATPAP29, PAP29 | purple acid phosphatase... 1799 0.0
> AT5G63140.1 | Symbols: ATPAP29, PAP29 | purple acid phosphatase
29 | chr5:25328119-25329799 FORWARD LENGTH=1471
Length=1471
Score = 1799 bits (974), Expect = 0.0
Identities = 1125/1195 (94%), Gaps = 21/1195 (2%)
Strand=Plus/Plus
Query 19 CAATGGCGGACAATCGAAGAAGAAGAAGCC---T--A-TT-C--CTTTTATCCGTGTTTC 69
|||||||||||||||||||||||||||||| | | || | ||||| ||||||||||
Sbjct 117 CAATGGCGGACAATCGAAGAAGAAGAAGCCTATTCGACTTCCTACTTTTCTCCGTGTTTC 176
Query 70 T--G----GCATGTCTCTGTTTAGCTCCGGTTCCGGCGACGGCTCAACGTTGGAAACTAA 123
| | ||||||||||||||| ||||| ||||||| || ||||||||| ||||||| |
Sbjct 177 TAGGACTCGCATGTCTCTGTTTATCTCCGATTCCGGCAACAGCTCAACGTCGGAAACTCA 236
Query 124 GGTTCGGTGTGAACGGCGAGTTCAAGTTACTACAAGTCGCGGATATGCATTTTGCTAACG 183
||||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 237 GGTTCAGTGTTAACGGCGAGTTCAAGATACTACAAGTGGCGGATATGCATTTTGCTAACG 296
Query 184 GCGTTACGACGCGGTGTCAAAATGTTCTGCCTAGCCAGAAAGCTCACTGCTCCGACCTCA 243
||| || ||||| ||||||||||||||| |||||||||| |||||| ||||| |||||||
Sbjct 297 GCGCTAAGACGCAGTGTCAAAATGTTCTTCCTAGCCAGAGAGCTCATTGCTCAGACCTCA 356
Query 244 ACACCACCATCTTCATGTCCCGAGTCATCGCCGCCGAGAAGCCTGATCTCATCGTCTTCA 303
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 357 ACACCACCATCTTCATGTCGCGAGTCATCGCCGCCGAGAAGCCTGATCTTATCGTCTTCA 416
Query 304 CTGGTGATAACATATTTGGGTTTGATGTTAAAGACGCTGTGAAATCTC-TAAACGCTGCG 362
| |||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||
Sbjct 417 CCGGTGATAACATATTTGGGTTTGATGTAAAAGACGCTTTGAAATC-CATAAACGCTGCG 475
Query 363 TTTGCTCCGGCGATTGCGTCTAAAATCCCATGGGTTGCTATTTTGGGAAACCATGATCAA 422
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 476 TTTGCTCCAGCGATTGCGTCTAAAATCCCATGGGTTGCTATTTTGGGAAACCATGACCAA 535
Query 423 GAATCTACATTTACACGACAACAAGTCATGAATCACATTGTGAAGCTTCCCAACACTTTG 482
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 536 GAATCTACATTTACAAGACAACAAGTTATGAATCACATTGTGAAGCTTCCCAACACTTTG 595
Query 483 TCTCAAGTGAATCCTCCTGAAGCTGCTCATTACATTGATGGGTTTGGAAATTACAATCTC 542
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 596 TCTCAAGTGAATCCTCCTGAAGCTGCTCATTACATTGATGGTTTTGGTAATTACAATCTC 655
Query 543 CAAATCCATGGAGCTGCTGATTCGAAACTACAGAACAAATCTGTTCTTAATCTTTATTTT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CAAATCCATGGAGCTGCTGATTCGAAACTACAGAACAAATCTGTTCTTAATCTTTATTTT 715
Query 603 CTCGATAGTGGAGATTACTCTAGTGTTCCTTACATGGAAGGTTATGATTGGATCAAAACT 662
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CTCGATAGTGGAGATTATTCTAGTGTTCCTTACATGGAAGGTTATGATTGGATCAAAACT 775
Query 663 TCTCAGCAATTTTGGTTCGACCGTACTTCAAAACGTCTGCA-GAGGGAGTACAACGCAAA 721
|||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 776 TCTCAGCAGTTTTGGTTCGACCGCACTTCAAAACGTCT-CAAGAGGGAGTACAACGCAAA 834
Query 722 GCCTAATCCTCAAGAAGGTATAGCTCCGGGACTAGCTTACTTCCACATTCCATTACCGGA 781
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 835 GCCTAATCCTCAAGAAGGTATAGCTCCAGGACTAGCTTACTTCCACATTCCATTACCGGA 894
Query 782 GTTTTGGAGTTTCGACTCAAAGAATGCTACAAAAGGAGTGAGACAAGAAGGTACATCCGC 841
||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 895 GTTTTTGAGTTTTGACTCAAAGAACGCTACAAAAGGAGTGAGACAAGAAGGTACATCCGC 954
Query 842 GGCTTCTACAAACTCGGGTTTCTTCACAACATTGGTAGCTAGAGGAGATGTGAAATCTGT 901
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 955 GGCTTCTACAAACTCGGGTTTCTTCACAACATTGATAGCTAGAGGAGATGTGAAATCTGT 1014
Query 902 GTTTGTGGGTCACGACCATGTCAACGACTTCTGCGGTGAACTCAAAGGTTTGAATCTATG 961
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1015 GTTTGTGGGTCACGACCATGTCAACGACTTCTGCGGTGAACTTAAAGGTTTGAATCTATG 1074
Query 962 CTATGGTGGTGGATTTGGGTACCATGCTTATGGTAAAGCTGGATGGGCGAGAAGAGCAAG 1021
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 1075 TTATGGTGGTGGATTTGGGTATCATGCTTATGGTAAAGCTGGATGGGAAAGAAGAGCGAG 1134
Query 1022 AGTTGTGGTTGTTGATTTGAATAAGAAGAGAAAAGGAAAATGGGGAGATGTGAAATCGAT 1081
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1135 AGTTGTGGTTGTTGATTTGAATAAGAAGAGAAAAGGAAAGTGGGGAGCTGTGAAATCGAT 1194
Query 1082 TAAGACATGGAAGAGGCTTGATGATAAGCATCTCTCTGTTATTGATTCTCAAGTTCTTTG 1141
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1195 TAAGACATGGAAGAGGCTTGATGATAAGCATCTCTCTGTTATTGACTCTCAAGTTCTTTG 1254
Query 1142 GAAGAGTTCTGCAAACAAATTGGTTGTTCGTTGATATTGAGTTC-ATGTGTTGTT 1195
||| | ||||||||||||||| |||||||||||||||||| ||| ||||||||||
Sbjct 1255 GAACAATTCTGCAAACAAATTAGTTGTTCGTTGATATTGA-TTCCATGTGTTGTT 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58684437105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5