BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951117
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63160.1 | Symbols: BT1 | BTB and TAZ domain protein 1 | chr... 1788 0.0
> AT5G63160.1 | Symbols: BT1 | BTB and TAZ domain protein 1 | chr5:25333263-25335485
REVERSE LENGTH=1406
Length=1406
Score = 1788 bits (968), Expect = 0.0
Identities = 1084/1141 (95%), Gaps = 4/1141 (0%)
Strand=Plus/Plus
Query 1 TTCTCTCTG-AAA-TTTAAACGATGGCTATAACCGCCACTCAAAACGACGGCGTTTCTCT 58
||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 65 TTCTCTCTGAAAACTTAAAACGATGGCTATAACCGCCACTCAAAACGACGGCGTTTCACT 124
Query 59 AATCGCCGATAAGTTTTCATATGATCTTGTGGAAACTGATGTTGAGATCATCACATCCGG 118
|| |||| ||||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 125 AAACGCCAATAAGATTTCGTATGATCTTGTGGAAACTGATGTTGAGATCATCACCTCCGG 184
Query 119 TCGCCGTCGTATTCCGGCACACTCCGGCATCCTCGCTTCGGGCTCACCGGTACTGACAAA 178
||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 185 TCGTCGTAGTATTCCGGCACACTCCGGCATCCTCGCTTCGGTCTCACCGGTACTGACGAA 244
Query 179 CATCATCGAGAAGCCGAGGAAAATCCACGGCCGATCATCGAAGAGAGTTATTAAGATTCT 238
||||||||||||||||||||| || |||||| |||||||||||| |||||||||||||||
Sbjct 245 CATCATCGAGAAGCCGAGGAAGATTCACGGCGGATCATCGAAGAAAGTTATTAAGATTCT 304
Query 239 CGGTGTTCCATGCGACGCCGTTTCAGTCTTCGTCAGATTCCTCTATTCTCCGAGTCTCAC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 305 CGGTGTTCCATGCGACGCCGTTTCAGTCTTCGTCAGATTCCTCTATTCTCCGAGTGTCAC 364
Query 299 GGAGAAAGAGATGGAAAAATACGGAATCCATCTACTAGCTTTATCACACGTGTATATGGT 358
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 365 GGAGAATGAGATGGAAAAATACGGAATCCATCTACTGGCTTTATCACACGTGTATATGGT 424
Query 359 GACTCAGTTAAAGCAACGGTGCACAAAAGGCGTCGGTGAGAGAGTAACCGCCGAAAACGT 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 425 GACTCAGTTAAAGCAACGGTGCACTAAAGGCGTCGGTGAGAGAGTAACCGCCGAAAACGT 484
Query 419 GGTCGATGTTCTCCAGCTGGCTCGTCTCTGCGACGCACCTGACCTCTGTCTCAAGTGTAT 478
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TGTCGATATTCTCCAGCTGGCTCGTCTCTGCGACGCACCTGACCTCTGTCTCAAGTGTAT 544
Query 479 GCGTTTCATTCATTACAAGTTCAAGACCGTTGAACAGACCGAAGGATGGAAGTTTCTTCA 538
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 545 GCGATTCATTCACTACAAGTTCAAGACCGTTGAACAGACAGAAGGATGGAAGTTTCTTCA 604
Query 539 AGAACACGATCCTTTTCTTGAACTTGACATTCTCCAATTCATCGACGAGGCTGAATCGAG 598
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 605 AGAACACGATCCTTTTCTTGAACTTGACATTCTCCAATTCATCGACGATGCAGAATCGAG 664
Query 599 GAAGAAAAGAAGAAGGAGACACAGACGAGAACAGAATCTGTATATGCAATTGAGTGAGGC 658
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||
Sbjct 665 GAAGAAAAGAAGAAGGAGACACAGACGAGAACAGAATCTGTATTTGCAGCTGAGTGAAGC 724
Query 659 CATGGAATGCATCGAACACATATGCACCGAAGGTTGCACACTGGTCGGACCTTCGTCTAA 718
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 725 CATGGAATGTATAGAACACATATGCACCGAAGGTTGCACACTGGTCGGACCATCGTCTAA 784
Query 719 CTTAGACGACAAGTCAACATCTCAAGTAAAAACCGGTCCATGCAGTGCGTTTTCGACTTG 778
||||||| |||||||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 785 CTTAGACAACAAGTCAACATGTCAAGCAAAACCCGGTCCATGCAGTGCGTTTTCGACTTG 844
Query 779 TTACGGACTCCAACTTCTGATACGTCACTTTGCGGTATGCAAGAAACGAGTCGATGGCAA 838
||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 845 TTACGGACTTCAACTTCTTATACGTCACTTTGCAGTATGCAAGAAAAGAGTCGATGGCAA 904
Query 839 AGGTTGTGTCCGTTGCAAGAGAATGATTCAACTTCTTAGACTCCATTCTTCGATCTGCGA 898
|||||||||||| |||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 905 AGGTTGTGTCCGATGCAAGAGAATGATTCAACTCCTTAGACTCCATTCTTCGATTTGTGA 964
Query 899 CCAATCTGAATCTTGCCGTGTCCCCCTTTGCAGGCAATATAAGAATAGAGGCGAAAAGGA 958
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 965 CCAATCTGAATCTTGCCGTGTCCCTCTTTGCAGGCAATATAAGAATAGAGGTGAAAAGGA 1024
Query 959 CAAGAAAATGGTTGAGGACACAAAGTGGAAGGTTCTGGTGAGAAGAGTTGCGTCTGCTAA 1018
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1025 CAAGAAAATGGTTGAGGACACGAAGTGGAAGGTTCTGGTGAGAAGAGTAGCGTCTGCTAA 1084
Query 1019 AGCCATGTCTTCGTTGTCTCAATCAAAGAAGaaaaaaaGTGAAGTGTTATTTAAAGAAGA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 AGCCATGTCTTCGTTGTCTCAATCAAAGAAGAAAAAAAGTGAAGTGTTATTTAAAGAAGA 1144
Query 1079 AGCAGAAGATTTCATCAGAATCCGGAACAAATTAA-GATGAATATTCAAAATATGTGTTT 1137
|||||||||||| ||||||||||||||||| |||| | ||||||| ||| ||||||||||
Sbjct 1145 AGCAGAAGATTTGATCAGAATCCGGAACAAGTTAATG-TGAATATACAATATATGTGTTT 1203
Query 1138 T 1138
|
Sbjct 1204 T 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5