BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951127

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63250.1 | Symbols:  | Carbohydrate-binding X8 domain superf...   549    8e-156


> AT5G63250.1 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr5:25360121-25360689 REVERSE LENGTH=569
Length=569

 Score =  549 bits (297),  Expect = 8e-156
 Identities = 375/412 (91%), Gaps = 8/412 (2%)
 Strand=Plus/Plus

Query  6    CATATACAAGCAAAAATGGTCACAAAAACAAAAACAATGTCTCTATCATTGACACTCCTC  65
            |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  14   CATATACAAGCAATTATGGTCACAAAAACAAAAACAATGTCTCTATCATTGACACTCCTC  73

Query  66   CTCTTCATCCTTGTATCTACCGTCTCCGTAACCTCAACACAAAGAAA-CCTCTCTCCAGC  124
            |||||||||||||| |||||||||||||| |||||||||| | |||| ||| || || ||
Sbjct  74   CTCTTCATCCTTGTTTCTACCGTCTCCGTGACCTCAACACTA-GAAAACCTTTCACCGGC  132

Query  125  GGCTGAAAACAAAGGAGTAT-GGTGCGTGGCGAATAATAAAGCGACAGATGAGCAGCTAC  183
             ||||||||||||||| ||| |||| || |||||||| ||||| ||||||||||||||||
Sbjct  133  AGCTGAAAACAAAGGA-TATTGGTGTGTAGCGAATAAAAAAGCAACAGATGAGCAGCTAC  191

Query  184  AAGCGAATATAGACTGGTGTTGCAGCTACGAAGGAGGATTCCGCGATTGTACACCGATCA  243
            ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct  192  AAGCGAATATAGATTGGTGTTGCAGCTACGAAGGAGGATTCCGTGATTGTACACAGATCA  251

Query  244  ATCCTGGTGGAGTTTGCTATGAACCAAATACTCTAAGAGACCACGCGTCGTACGTAATGA  303
            |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  252  ATCCCGGTGGAGTTTGCTATGAACCAAATACTCTACGAGACCACGCGTCGTACGTAATGA  311

Query  304  ATTTGTATTACCAGAATCTTGGCTCCA-CCAAAGACCAATGCACTTTCAACGGTACTGGC  362
            | || ||||||||||| ||||| |  | |||||||||||||||||||||||||| |||||
Sbjct  312  ACTTATATTACCAGAACCTTGG-TAGAACCAAAGACCAATGCACTTTCAACGGTTCTGGC  370

Query  363  ACCCAGGTT-CGTAAAGACCCAAGCCATGGCGCGTGTATTTTCATATCTTAT  413
             |  | ||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct  371  TCTGAAGTTAC-TAAAGACCCAAGCCATGACGCGTGTATTTTCATATCTTAT  421



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20710312588


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5