BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951139
Length=1894
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63370.1 | Symbols: | Protein kinase superfamily protein | ... 2939 0.0
> AT5G63370.1 | Symbols: | Protein kinase superfamily protein
| chr5:25383906-25387224 REVERSE LENGTH=3319
Length=3319
Score = 2939 bits (1591), Expect = 0.0
Identities = 1797/1896 (95%), Gaps = 15/1896 (1%)
Strand=Plus/Plus
Query 1 TTTCTCATTGAGAAGAATACGATGGCGGCAGGGGGTGTTGATGTCTCCAGAAGTTCTGTT 60
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 412 TTTCTCATTGAGAAGAATACGATGGCAGCAGGGGGTGTTGATGTTTCCAGAAGTTCCGTT 471
Query 61 GCCGTCGAAAAAGACTACGACTTTTACAGGAATGGTTCTCGTGATGTGTATGTTCGACAG 120
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GCTGTCAAAAAAGACTACGACTTTTACAGGAATGGTTCTCGTGATGTGTATGTTCGACAG 531
Query 121 AGTGGTAGAGATGCCGAGAGGCGTCAAATCAAACGGCCTAGTGACCATGATCTCAGGAGG 180
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 532 AGTGGTAGAGATGACGAGAGGCGTCAAATCAAAAGGCCTAGTGACCATGATCTCAGGAGG 591
Query 181 AATGATGGGCGTCACCGATCACGGTTGGCTTATGAGAAAGGGGAACTACGAGAGGAAGCG 240
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 592 AATGATGGGCGTCACCGATCACGGTTGGCATATGAGAAAGGGGAACTACGGGAGGAAGCA 651
Query 241 GAGGTTCAGAGACCCTCTGAGAAAAGGAGGAAGTTTTCACCCATCTTGTGGAATGCAAAA 300
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 652 GAGGTTCAGAGACCCTCTGAGAAAAGGAGGAAGTTTTCACCCATCGTGTGGAATGC---A 708
Query 301 GAAGACAAAGTGGGTAGAGCTCCGTCTGGGGAGAAAACAAAGTCTCCTTTCCCTATTCCG 360
| | | ||||||||||||||||| ||| ||||||| || ||||||||||||||| |||||
Sbjct 709 G-A-A-AAAGTGGGTAGAGCTCCATCTAGGGAGAAGACCAAGTCTCCTTTCCCTGTTCCG 765
Query 361 ACTACAACTGTGATATCCAACCAGGCTGTTGCTGGTAAGACTTCTTCAAAGGATCAAGTT 420
|||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct 766 ACTACAACTGTGATATCCAATCAGGCTGTTGCTGGTAAGACTACTTCAAACGATCAAGTG 825
Query 421 AAtttttttATGTCGCCAGAACCTAGTTATCTTGTTCCAGTGCAGCCTTTAGAAGCCATG 480
||| || ||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 826 AATGCCTTGATGTCGCCAGAACCTAGTTATCTTGCTCCAGTGCAGCCTTCAGAAGCCCTG 885
Query 481 CTGTCTGTGAAACATTCC-GTTGATGATTTGGAGGAGGGTCAGTTGGAGGAAGAACAGGT 539
||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 886 CTGGCTGTGAAACA-TCCTGTTGATGATTTGGAGGAGGGTCAGTTGGAGGAAGAACAGGT 944
Query 540 GATGCAGAAGCATGTAAAAGAGGGTCTGTTGGAGGAAGAACAAGTGATGCAGGAACCATG 599
||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 945 GATGCAGGAGGATGTAAAGGAGGGTCTGTTGGAGGAAGAACAAGTGATGCAGGAACCAAA 1004
Query 600 TATTAAGACATCTAGGTGGGGGACGGGTTTGACTTCCCCAAAGGAGGAGTTAATATCTCA 659
||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1005 TATAAAGACATCTAGGTGGGGGACAGGTTTGACTTCCCCAAAGGAGGAGTTAATA--TC- 1061
Query 660 TGCTGATAATGTTTCCAAGACTAGTAGATGGAACAGGAGCAGTTTGACACCGGAGTGCGA 719
|| | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1062 TG-T--TAACGTTTCCAAGACTAATAGATGGAACAGGAGCAGTTTGACACCGGAGTGCGA 1118
Query 720 GGAAGTAATGGTGTCTGAAGAACCGCAGTGCTATTCATCTGGATCTGGCAGTGGACATCG 779
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1119 GGAAGTAATGGTGTCTGAAGAACAGCAGTGCTATTCGTCTGGATCTGGCAGTGGACATCT 1178
Query 780 CAGCGTAGAGAATCTTAGTGCAGATGAAAATTCTGATCGTGAGTATTGTAGTTCTGATCA 839
|||||||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1179 CAGCGTAGAGAAGCTTAGTGCAGATGGAAATTCTGGTCGTGAGTATTATAGTTCTGATCA 1238
Query 840 TGATGAGTTAGAAAATGAAGATCCAGATTCTTCAACTCAGGGAGGGATGGACATGATGCT 899
||||||||||||| ||||||||| |||||||| ||||| ||||| |||| |||||||| |
Sbjct 1239 TGATGAGTTAGAACATGAAGATCAAGATTCTTTAACTCCGGGAGAGATGAACATGATGTT 1298
Query 900 TGGGAGCAGGTCTGTGAATGAATTTCAGAAGCTAAACAAGATAAATGAAGGAACGTATGG 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1299 TGGGAGCAGGTCTGTGAATGAATTTCAGAAGCTAAACAAGATAAATGAAGGAACATATGG 1358
Query 960 AATTGTTTACAAAGCAAGAGATGAGAAAACAAAGGAGATTGTGGCGCTCAAAAAGATCAA 1019
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 1359 AATTGTTTACAAAGCAAGGGATGAGAAAACAAAAGAGATTGTTGCGCTCAAAAAGATCAA 1418
Query 1020 GATGAAGGAAGATAGGTTCGAAGAAGAGTATGGATTCCCTTTGACATCGTTGAGGGAAAT 1079
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1419 GATGAAGGAAGATAGGTTCGAAGAAGAGTATGGATTCCCTTTGACATCATTGAGGGAAAT 1478
Query 1080 TAACATACTTCTGTCATGCAATCACCCTGCGATTGTGAACGTGAAGGAGGTTGTGGTTGG 1139
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 TAACATACTTTTGTCATGCAATCACCCTGCGATTGTGAACGTGAAGGAGGTTGTGGTTGG 1538
Query 1140 AGGGAAAAACGATAGTGATGTTTATATGGTCATGGAACACTTAGAACATGACCTGAGGGG 1199
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1539 AGGGAAAAACGATAATGATGTTTATATGGTCATGGAACACTTAGAACACGACCTGAGGGG 1598
Query 1200 TGTAATGGATAGAAGGAAGGAACCTTTTAGCACTAGCGAAGTCAAGTGCTTGATGATGCA 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 AGTAATGGATAGAAGGAAGGAACCTTTTAGCACTAGCGAAGTCAAGTGCTTGATGATGCA 1658
Query 1260 GCTGTTGGATGGTTTGAAATACCTCCACACAAATTGGATTATCCACAGGGATCTGAAGCC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 GCTGTTGGATGGTTTGAAATACCTCCACACAAATTGGATTATCCACAGGGATCTGAAGCC 1718
Query 1320 ATCTAATCTTCTAATGAACAATTGTGGGGAGTTAAAAATATGTGATTTTGGGATGGCACG 1379
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1719 ATCTAATCTTCTGATGAACAATTGTGGGGAGTTAAAAATATGTGATTTTGGGATGGCGCG 1778
Query 1380 CCAGTATGGGAGCCCTATCAAGCCGTATACCCAGATGGTTATTACTCAGTGGTACAGGCC 1439
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 1779 CCAGTATGGGAGCCCTATCAAGCCTTACACCCAGATGGTTATTACCCAGTGGTACAGGCC 1838
Query 1440 ACCTGAACTTCTTCTAGGAGCAAAAGAGTACTCTACAGCAGTTGATATGTGGTCAGTTGG 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1839 ACCTGAACTTCTTCTAGGAGCAAAAGAGTACTCTACAGCAGTTGATATGTGGTCAGTGGG 1898
Query 1500 TTGCATTATGGCTGAACTGTTGTCTCAAAAGCCTTTGTTCCCGGGCAAGAGTGAGCTTGA 1559
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1899 TTGCATTATGGCTGAACTGTTGTCTCAAAAGCCTTTGTTCCCGGGTAAGAGTGAGCTTGA 1958
Query 1560 CCAACTTCAAAAGATCTTTGCGGTCCTTGGAACACCAAACGAGGCAGTCTGGCCTGGATT 1619
||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||| ||
Sbjct 1959 CCAACTTCAGAAGATCTTTGCGGTCCTTGGAACACCAAACGAAGCAATATGGCCTGGGTT 2018
Query 1620 TTCATCATTCCCGAATGCGAAAGCCAAGTTTCCTACACAACCTTACAATATGTTACGTAA 1679
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 2019 CTCATCATTTCCGAATGCTAAAGCCAAGTTTCCTACACAGCCTTACAATATGTTACGTAA 2078
Query 1680 GAAGTTTCCAGCTATTTCATTTGTAGGTGGTCAAATTCTTTCTGAACGTGGATTTGATTT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2079 GAAGTTTCCAGCTATTTCATTTGTAGGTGGTCAAATTCTTTCTGAACGTGGATTTGATTT 2138
Query 1740 GCTGAACAGTCTATTAACTTTGGATCCTGAGAAACGTCTAACAGTGGAAGAGGCTCTCAA 1799
||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2139 GCTGAACAGTCTACTAACTTTGGACCCTGAGAAACGTCTAACAGTGGAAGATGCTCTCAA 2198
Query 1800 CCATGGTTGGTTCCATGAAGTCCCGCTACCGAAATCCAAAGATTTCATGCCAACATATCC 1859
||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 2199 CCATGGTTGGTTCCATGAAGTCCCGTTACCAAAATCCAAAGATTTCATGCCGACATATCC 2258
Query 1860 TCCAAAGCGGTAACTGa-aaaaaaCCTGCCATCATT 1894
||||||||||||||||| ||||||| ||| ||||||
Sbjct 2259 TCCAAAGCGGTAACTGAGAAAAAACGTGCTATCATT 2294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93774618060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5