BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951140
Length=1732
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63380.1 | Symbols: | AMP-dependent synthetase and ligase f... 2739 0.0
> AT5G63380.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr5:25387411-25390063 REVERSE LENGTH=1896
Length=1896
Score = 2739 bits (1483), Expect = 0.0
Identities = 1643/1722 (95%), Gaps = 4/1722 (0%)
Strand=Plus/Plus
Query 13 TCTTCAAGAATGCAGACGAAAAACAACGACAGCCGTTCGATTGACCGGAGCTCCGGCTTC 72
||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 29 TCTTCCAGAATGCTGACGAAAACCAACGACAGCCGTTTGATTGACCGGAGCTCCGGCTTC 88
Query 73 GATCAACGGACAGGAATTTATCACAGTCTTCG-CCCTTCTCTTTCTCTACCTCCTATAGA 131
||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 89 GATCAACGGACAGGAATCTATCACAGTCTTCGTCCC-TCTCTTTCTCTACCTCCTATAGA 147
Query 132 TCAACCTCTCTCCACCGCCGAATTCGCACTTTCTCTGCTCCGCAAATCCTCACCACCAGC 191
||||||||||||| ||||||||||||| |||||||| || | ||||||||||||||| ||
Sbjct 148 TCAACCTCTCTCCGCCGCCGAATTCGCGCTTTCTCTCCTACTCAAATCCTCACCACCTGC 207
Query 192 CACCGCCGGGAAAAACATTGAAGCCTTAACCTTCCTAGTTAACTCGAGCTCTGGTGATAG 251
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 208 CACCGCCGGGAAAAACATTGAAGCCTTAACCTACCTAGTTAACTCGAGCTCTGGTGATAA 267
Query 252 CCTCACTTATGGAGAGCTTCTTCGTGGAGTTCGTTCTCTTGCTGTATCTCTCCGGGAGCG 311
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 268 CCTCACTTATGGAGAGCTTCTTCGTAGAGTTCGTTCTCTTGCTGTATCTCTCCGGGAGCG 327
Query 312 ATTTCCTTCTCTTTCCTCCAGAAATGTCGCTTTTATCCTCTCTCCACCTTCGCTGCACAT 371
||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 328 ATTTCCTTCTCTTGCCTCCAGAAATGTCGCTTTTATCCTCTCTCCTTCTTCGTTGGACAT 387
Query 372 ACCAGTGCTTTACTTAGCTTTAATGTCGATCGGTGTTGTTGTTTCACCGGCGAACCCAAT 431
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 388 ACCAGTGCTTTACTTAGCTTTGATGTCGATCGGTGTTGTTGTTTCACCGGCGAACCCAAT 447
Query 432 CGGATCTGAATCAGAGGTGAGTCATCAGGTTGAAGTCAGTGAACCAGTAATTGCGTTCGC 491
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 448 CGGATCTGAATCGGAGGTGAGTCATCAAGTCGAAGTCAGTGAACCAGTAATTGCGTTCGC 507
Query 492 GACATCGCAGACGGTTAAGAAGCTTCGGTCCTCATCTTTCCCTCTCGGAATC-GTTCTGA 550
|||||||||||||||||||||||||| ||||| ||||| |||||||||| | |||||||
Sbjct 508 GACATCGCAGACGGTTAAGAAGCTTCAATCCTCTTCTTTGCCTCTCGGAA-CTGTTCTGA 566
Query 551 TGGACTCGCCTGAGTTTCTCTCCTGGTTAAATCGATCGGATGCTTCATCGGTTAATCCAT 610
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 567 TGGACTCGACTGAGTTTCTCTCCTGGTTAAATCGATCGGATTCTTCATCGGTTAATCCAT 626
Query 611 TTCAGGTTCGGGTCAACCAATCGGACCCTGCCGCAATCCTCTTTTCGTCTGGAACTACCG 670
||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 627 TTCAGGTTCAGGTCAACCAATCGGACCCTGCCGCTATCCTCTTTTCCTCTGGAACAACCG 686
Query 671 GGCGGGTCAAAGGCGTTTTGATCACTCACCGTAACCTAATCGCCTCGACCGCCGTGTCTC 730
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 687 GGCGGGTCAAAGGCGTTTTGCTCACTCACCGTAACCTAATCGCCTCGACCGCCGTATCTC 746
Query 731 ACCAACGGACTCTCCAAGATCCGGTTGATTATGATCGCGTTGGACTGTTCTCGCTTCCGC 790
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 747 ACCAACGGACTCTCCAAGATCCGGTTAATTACGATCGCGTTGGACTGTTCTCGCTTCCGC 806
Query 791 TCTTCCACGTGTTTGGCTTCACGATGATGATTCGAGCCATCTCGCTTGGAGACACGCTGG 850
|||||||||||||||| |||| |||||||||||||||||||||||||||||| || |||
Sbjct 807 TCTTCCACGTGTTTGGTTTCATGATGATGATTCGAGCCATCTCGCTTGGAGAGACATTGG 866
Query 851 TGCTTTTAGGGAGATTCGAGCTTGAGGCGATGTTAAAGGCGGTGGAGAAATATAAGGTTA 910
|||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||
Sbjct 867 TGCTTTTAGGGAGATTTGAACTCGAGGCGATGTTTAAGGCGGTGGAGAAATATAAGGTTA 926
Query 911 CTGGTATGCCTGTATCTCCTCCGTTGATTGTAGCATTGGTCAAATCGGAGCTAACGAAGA 970
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 927 CTGGTATGCCTGTATCTCCTCCGTTGATTGTAGCGTTGGTCAAATCGGAGCTCACGAAGA 986
Query 971 AGTACGATCTCCGGTCGTTGCGTTCTCTTGGCTGCGGCGGCGCTCCACTCGGCAAAGACA 1030
||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 987 AGTACGATCTCCGGTCGTTGCGTTCCCTTGGCTGCGGAGGAGCTCCACTCGGCAAAGACA 1046
Query 1031 TCGCAGAGAGGTTCAAGCAGAAATTCCCAGATGTGGAAATTGTACAGGGCTATGGCTTGA 1090
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1047 TCGCAGAGAGGTTTAAGCAGAAATTCCCAGATGTAGATATTGTACAGGGCTATGGCTTGA 1106
Query 1091 CGGAGAGCTCGGGGCCAGCTGCGTCAACTTTTGGACCTGAAGAGACGGTAAAATATGGCT 1150
| ||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 1107 CAGAGAGCTCGGGACCAGCTGCCTCAACGTTTGGACCTGAAGAGATGGTAAAATATGGCT 1166
Query 1151 CAGTTGGTCGTATCTCTGAGAATTTGGAAGCCAAAATTGTTGATCCATCCACCGGAGAAG 1210
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1167 CAGTTGGTCGTATCTCTGAGAATATGGAAGCCAAAATTGTTGATCCATCCACCGGAGAAT 1226
Query 1211 CCTTGCCACCGGGAAAAACCGGTGAACTATGGCTCCGAGGACCAGTCATCATGAAAGGTT 1270
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1227 CCTTGCCACCGGGAAAAACTGGTGAACTCTGGCTCCGAGGACCAGTCATCATGAAAGGTT 1286
Query 1271 ATGTGGGAAACGAGAAAGCGAGTGCGGAGACAGTAGACGAAGAAGGGTGGTTAAAGACTG 1330
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1287 ATGTGGGAAACGAGAAAGCGAGTGCGGAGACAGTAGACAAAGAAGGGTGGTTAAAGACTG 1346
Query 1331 GTGATCTCTGTTATTTTGATGCGGAAGGTTTTCTATATATTGTTGATCGGCTAAAGGAAC 1390
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 1347 GTGATCTCTGTTATTTTGATTCGGAAGATTTTCTATATATTGTTGATCGGCTAAAGGAGC 1406
Query 1391 TAATCAAATACAAGGCTTATCAGGTTCCACCGGTAGAGTTGGAGCAGATTCTTCACTCGA 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TAATCAAATACAAGGCTTATCAGGTTCCACCGGTAGAGTTGGAGCAGATTCTTCACTCGA 1466
Query 1451 ATCCAGATGTGATTGATGCTGCAGTTGTTCCGTTCCCTGACGAGGATGCAGGAGAGATTC 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 ATCCAGATGTGATTGATGCTGCAGTTGTTCCGTTCCCTGACGAGGATGCAGGAGAGATTC 1526
Query 1511 CAATGGCTTTCATAGTGAGAAAACCAGGAAGCAATCTCAACGAAGCGCAAATCATTGATT 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 CAATGGCTTTCATAGTGAGAAAACCAGGAAGCAATCTCAACGAAGCGCAAATCATTGATT 1586
Query 1571 TCGTAGCTAAACAAGTTGCTCCGTACAAGAAGGTAAGACGAGTTGCTTTCATAAATGCAA 1630
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1587 TCGTAGCTAAACAAGTTACTCCGTACAAGAAGGTAAGACGAGTTGCTTTTATAAATGCAA 1646
Query 1631 TCCCAAAAAATCCTGCTGGCAAGATTCTGCGTCGGGAACTTACTAAAATCGCCGTGGATG 1690
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1647 TCCCAAAAAATCCTGCTGGCAAGATTCTGCGTCGGGAGCTTACTAAAATCGCTGTGGATG 1706
Query 1691 GCAATGCATCAAAGCTTTGAGATAACCGGCCGGCTCAGATAT 1732
||||||||||||| |||||||||||||||| || ||| ||||
Sbjct 1707 GCAATGCATCAAAACTTTGAGATAACCGGCTGGTTCATATAT 1748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85642129770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5