BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951147

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63460.4 | Symbols:  | SAP domain-containing protein | chr5:...   584    3e-166


> AT5G63460.4 | Symbols:  | SAP domain-containing protein | chr5:25413368-25415509 
REVERSE LENGTH=872
Length=872

 Score =  584 bits (316),  Expect = 3e-166
 Identities = 334/343 (97%), Gaps = 0/343 (0%)
 Strand=Plus/Plus

Query  185  AAGGACAGCATATCAAAACAAACCAGCAAAATATACTAATTAGATCTCTCTTGTTAAAGA  244
            ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  307  AAGGACAGCTTATCAAAACAAACCAGCAAAATATACTAATCAGATCTCTCTTGTTAAAGA  366

Query  245  AGCAAAAAGGCGAATCTAGTTCTAAAGACTCAAAAGGAACTGCTGAAGATGGTCCTAAAA  304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  367  AGCAAAAAGGCGAATCTAGTTCTAAAGACTCAAAAGGAACTGCTGAAGATGGTCCTAAAA  426

Query  305  AGAGGGCTGCAAATAGGGCTCTAGACGACAGAAGCTCAGCTAAAAGAGCTGCTAATGCAT  364
            |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct  427  AGAGGGCTGCAAATAGAGCTCTGGACGACAGAAGCTCAGCTAAAAGAGCTGCTAATGCAT  486

Query  365  CTAGACAAGAAGGATCAAGCAGTCGCACTGGCGAAAGAGACTTTCAGTCTTTGACAGTTG  424
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct  487  CTAGACAAGAAGGATCAAGCAGTCGCACAGGCGAAAGAGACTTTCAGTCTTTGACCGTTG  546

Query  425  AGAAGCTCCGTGCCCTGCTCAAGGAGAAGGGCCTTCCAACAAAAGGAAGAAAGGATGAGC  484
            |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  547  AGAAGCTCCGCGCCATGCTCAAGGAGAAGGGCCTTCCAACAAAAGGAAGAAAGGATGAGC  606

Query  485  TCATTGCGCGTCTGAAGAGTGCCAACTGAAATCAAGTTGAGAA  527
            |||||||||||||||||||||||||||||||| ||||||||||
Sbjct  607  TCATTGCGCGTCTGAAGAGTGCCAACTGAAATGAAGTTGAGAA  649


 Score =  296 bits (160),  Expect = 1e-79
 Identities = 176/184 (96%), Gaps = 0/184 (0%)
 Strand=Plus/Plus

Query  1    CTAGGGTTTATCAGTGGTTTGTCAATGGAGGCTTCATCGTCTCAGCCATCCGATTCTTCT  60
            |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  87   CTAGGGTTTATCAGTGGTTTGTCAATGGAGGCTTCATCATCTCAACCATCCGATTCTTCT  146

Query  61   GACCAAACTGCTTCTAAGTTCCTATCTGACCTCCCGTCTCGCGGTTTCTTGTCTTCTACC  120
            || ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  147  GATCAAACTGCTTCCAAGTTCCTTTCTGACCTCCCGTCTCGAGGTTTCTTGTCTTCTACC  206

Query  121  GTTGTCTCTTCCAATCCGGGAAGCATGCGGGTCTACATTTGTGAGCATGACACATCTCCC  180
            || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  207  GTCGTCTCTTCCAATCCGGGAAGCTTGCGGGTCTACATTTGTGAGCATGACACATCTCCC  266

Query  181  CCAG  184
            ||||
Sbjct  267  CCAG  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25518946676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5