BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951153
Length=401
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35165.1 | Symbols: | Protein of unknown function (DUF1278)... 204 6e-52
AT2G14378.1 | Symbols: | Protein of unknown function (DUF1278)... 196 1e-49
> AT4G35165.1 | Symbols: | Protein of unknown function (DUF1278)
| chr4:16735123-16735883 FORWARD LENGTH=761
Length=761
Score = 204 bits (110), Expect = 6e-52
Identities = 227/281 (81%), Gaps = 17/281 (6%)
Strand=Plus/Plus
Query 126 TCAAAATCTCCACC-GAGTTCTCCTATCGATTTAGAGAAATGTTGGTCATCTCTCTTC-A 183
||| ||| |||||| || || |||||| ||| | || ||||||||| |||| || ||| |
Sbjct 278 TCACAATTTCCACCGGA-TTTTCCTATTGATGTGGAAAAATGTTGGGCATCACTTTTCAA 336
Query 184 -ACGTCCATGGATGCGTACTCGAGC-TATACAAATCAGTTTTCAGTGGAAAGTTTGGAAA 241
|| | || ||||||||| |||| | | || || |||||||| ||| ||||||||||
Sbjct 337 TAC-T-CAGGGATGCGTATTCGAACTTTTA-AAGTCAGTTTTTTCTGGTCAGTTTGGAAA 393
Query 242 CGTTGGAATCGCGTGTTGCAAGGCATAT-TCGACCATAGATGCTAACTGTTGGCCTCATA 300
|||||| | || |||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 394 TGTTGGAGTTGCATGTTGCAAAGCAT-TGTCGACCATAGATGCTAACTGTTGGCCTCATA 452
Query 301 TGTTTCCG-TTGAACCCGTTCTTTCCACCTCTTCTTAAAGACAATTGTGCACACATCGTT 359
|||| ||| || |||||||||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 453 TGTTCCCGCTT-AACCCGTTCTTTCCACCTCTGCTTAAGGACAACTGTGCGCACATCGTC 511
Query 360 CCCAACT-TGCCCGCACACTAGTGAAATCGAGAAAGAAGTG 399
||||| | | ||| || | ||||||| || ||| |||||
Sbjct 512 CCCAATTCT-CCCTCA-A--AGTGAAAGCGGGAATCAAGTG 548
> AT2G14378.1 | Symbols: | Protein of unknown function (DUF1278)
| chr2:6104869-6105231 REVERSE LENGTH=363
Length=363
Score = 196 bits (106), Expect = 1e-49
Identities = 281/363 (77%), Gaps = 22/363 (6%)
Strand=Plus/Plus
Query 21 ATGGAAAACAAAGCAAGAGCTATTGCCTCCTTAGTAC-TAGTTGTAGTTTTATATGCAAC 79
|||| |||||| ||||||||||| ||| ||| | | ||||||||| |||| ||| |
Sbjct 1 ATGGGAAACAATTCAAGAGCTATTTTCTCTTTA-TTCTTAGTTGTAGCCTTATGTGCTGC 59
Query 80 GGGTTTGATTACTCCAGGAGTAGTAGCTCACGA-G--GAACCA---CTACAATCAAAATC 133
||| || ||||| ||| | ||||||| || | ||||| | | ||| |||
Sbjct 60 AATTTTAATCACTCCCGGA--A-TAGCTCATGATGAACAACCACCGCCCCGCTCACAATT 116
Query 134 TCCACC-GAGTTCTCCTATCGATTTAGAGAAATGTTGGTCATCTCTCTTC-A-ACGTCCA 190
|||||| || || |||||| ||| | || |||||||||||||| || ||| | || | ||
Sbjct 117 TCCACCGGA-TTTTCCTATTGATGTGGAAAAATGTTGGTCATCACTTTTCAATAC-T-CA 173
Query 191 TGGATGCGTACTCGAGCTATACAAATCAGTTTTCAGTGGAAAGTTTGGAAACGTTGGAAT 250
||||||||| |||| || | || |||||||| ||| ||||||| | |||||| |
Sbjct 174 AGGATGCGTATTCGAACTTTTGAAGTCAGTTTTTTCTGGTCGGTTTGGAGATGTTGGAGT 233
Query 251 CGCGTGTTGCAAGGCATAT-TCGACCATAGATGCTAACTGTTGGCCTCATATGTTTCCG- 308
|| |||||||| |||| | |||||| |||||||||||||||||||||||||||| |||
Sbjct 234 TGCATGTTGCAAAGCAT-TCTCGACCGTAGATGCTAACTGTTGGCCTCATATGTTCCCGC 292
Query 309 TTGAACCCGTTCTTTCCACCTCTTCTTAAAGACAATTGTGCACACATCGTTCCCAACTTG 368
|| |||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||| ||
Sbjct 293 TT-AACCCGTTCTTTCCACCTCTGCTTAAGGACAACTGTGCGCACATCGTACCCAA-TTC 350
Query 369 CCC 371
|||
Sbjct 351 CCC 353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18950941373
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5