BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951157
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63540.2 | Symbols: ATRMI1, BLAP75, RMI1 | Domain of unknown... 1458 0.0
> AT5G63540.2 | Symbols: ATRMI1, BLAP75, RMI1 | Domain of unknown
function (DUF1767) | chr5:25440783-25444438 REVERSE LENGTH=2349
Length=2349
Score = 1458 bits (789), Expect = 0.0
Identities = 1014/1114 (91%), Gaps = 50/1114 (4%)
Strand=Plus/Plus
Query 890 AACAAGGATAGGAGTGGTTCCTTCATTGACAACCAGAGCAACCCTAGCTGCGTGGTCGC- 948
||||||| |||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1016 AACAAGGGTAGGAGTGGTTCCTTCTTTAACAACCAGAGCAACTCTAGCTGCGTGGTCGCT 1075
Query 949 ---T----A--A-A-TGG----C----A-ATGATACTGGTAATCATGTAGATAGTTCTAC 988
| | | | ||| | | |||||||||||||||||||| |||||||| |
Sbjct 1076 AAATGGCAATGATACTGGTAATCATGTACATGATACTGGTAATCATGTAAATAGTTCTGC 1135
Query 989 CTCGGGCAATGCTAGTCACGCTCAGGCCAATCCTCAAGGCATACCCGTAAATGTAACGAG 1048
||||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||
Sbjct 1136 CTCGGGCAATGCTAGTCACACTCAAGCCAA---TCAAGGCATACCCGTACATGTAACGAG 1192
Query 1049 AACTCACATTAGTTCACGGGCGATGGATGAGCATCCTGCTTCTACCAATGTGGAAGCTAC 1108
|||||||| ||||||||||||||||||||| | || ||||||||||||||||| ||||||
Sbjct 1193 AACTCACAATAGTTCACGGGCGATGGATGAACCTCTTGCTTCTACCAATGTGGGAGCTAC 1252
Query 1109 TGTTTCTAGGGTTGAGCATATGCAGATTGATACTGCTTCTGCGCATGGGGAAAGAACGTT 1168
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1253 TGTTTCAAGGGTTGAGCATATGCAGATTGATACTGCTTCTGCGCACGGGGAAAGAACGTT 1312
Query 1169 TTCTGGTATACACTCAACTTCTAGTAACATTCACCG-GCCAGCATCCACA----G--CTG 1221
||||| |||||| ||||||||||||||||||||||| | ||||||||||| | |||
Sbjct 1313 TTCTGATATACATTCAACTTCTAGTAACATTCACCGAG-CAGCATCCACAGCTGGTACTG 1371
Query 1222 GTACTAGCTGCAGT-G-G--T--A------CAAGATCTTTTTCCAACAACGTTGGCAGAA 1269
|||||||||||||| | | | | ||||||||||| |||||||||||||| |||
Sbjct 1372 GTACTAGCTGCAGTGGTGCCTGCAGTGGTGCAAGATCTTTTGCCAACAACGTTGGCGGAA 1431
Query 1270 GTACATTGGATCAACAAACTTCTAACGTGACTTCATTTGTTGAAGAAATGCATATTGACA 1329
| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 ATTCATTGGAT---CAAACATCTAACGTGACTTCATTTGTTGAAGAAATGCATATTGACA 1488
Query 1330 CGGGTCGTGTAAGAGATACAACGTCTCATGTATATGGTTCAGGTTCAGGCGGAGTAGCAG 1389
| ||||||||||| ||||||||| ||||| |||||||||||| ||||||||| |||||
Sbjct 1489 CTGGTCGTGTAAGGGATACAACGACTCATATATATGGTTCAGATTCAGGCGGTGTAGC-- 1546
Query 1390 ATGCAGAAGTCAGTAATAAAATTGTCGATTTGGAAGGCCCTTCTGTGATGTCTACAAATA 1449
| |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1547 A-GCAGAATTCAGTAATATGGTTGTCGATTTGGAAGGCCCTTCTGTGCTGTCTACAAATA 1605
Query 1450 CAGAGAAGCCTTTCACTTACTTAGCCGAGTTGTCTCAAAAATGGGCAGTTATGAAAGATA 1509
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 CAGAGAAACCTTTCACATACTTAGCCGAGTTGTCTCAAAAATGGGCAGTTATGAAAGATA 1665
Query 1510 CCATACATTTTGTTCAAGGAAGGATCAAGTGCTTTCTAACTGGAGTGAAGAAATTCCAGT 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 CCATACATTTTGTTCAAGGAAGGATCAAGTGCTTTCTAACTGGAGTGAAGAAATTCCAGT 1725
Query 1570 TCAAGCAACAGTCTACGTATGAGCTTCTATGCTACGTTGATGATGGAAGTCTCATCTGTG 1629
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1726 TCAAGCAACAGTCTACGTATGAGCTTCTATGCTATGTTGATGATGGTAGTCTCATCTGTG 1785
Query 1630 AGATCTTGCTCCATAACGATGTTGTACAAAAAAGGATAGGACATACATCCATGGAAGTCA 1689
|||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1786 AGATTTTGCTCCATAACGACGTTGTACAAAAAAGGATAGGACATTCATCCATGGAAGTCA 1845
Query 1690 CAGCTGCTCTTTCCTCTTCAGCACCAACATCAGTAAATGCCATGATGAAAGAGAAACTGA 1749
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1846 CAGCTGCTCTTTCCTCGTCAGCTCCAACATCACTAAATGCCATGATGAAAGAGAAACTGA 1905
Query 1750 AACGCTTCCAGTTGTTTCTCGCTGACTTCGAGGGAATAATGATGGTAGAAATGAACAGAT 1809
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1906 AACGCTTCCAGTTGTTTCTCGCTGACTTTGAGGGAATAATGGTGGTAGAAATGAACAGAT 1965
Query 1810 CGTCGCAATATCCAGTAGCTATTGAAATGAATCAGGGATGTTCGCTAACCGATGCTCGGT 1869
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1966 CGTCGCAATATCCAGTAGCTATCGAAATGAATCAGGGATGTTCGCTAACCGATGCTCGGT 2025
Query 1870 TACTCTTGGAAAGAATCAAATCTTCTTCAAGAACATCCTCAAGCTTAAATCCAGTTGTTG 1929
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 TACTCTTGGACAGAATCAAATCTTCTTCAAGAACATCCTCAAGCTTAAATCCAGTTGTTG 2085
Query 1930 TTCTATCCCCTTGATCCAGTAGTCAACTAAAAGC 1963
|||| |||||||||||||||| ||||||||||||
Sbjct 2086 TTCTGTCCCCTTGATCCAGTACTCAACTAAAAGC 2119
Score = 1312 bits (710), Expect = 0.0
Identities = 836/893 (94%), Gaps = 24/893 (3%)
Strand=Plus/Plus
Query 1 CCTAAATTTCGCCGGCG-A-AAATGCGTAGACGACGCCTGCAACTCCGGTACTCCTCCGA 58
||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 44 CCTAAATTTCGCCGGCGAAGAAATGCGTAGACGGCGCCTGCAACTCCGGTACTCCTCCGA 103
Query 59 CgaagaagaagaagaaggagaagaaACTGGAACAAGCGGAATTGGTGATTCT-TCTCAGA 117
| |||||||||| | ||| |||||||||||||||||| ||||||||||| | |||||
Sbjct 104 C---GAAGAAGAAG-A--AGATGAAACTGGAACAAGCGGAGTTGGTGATTCTGT-TCAGA 156
Query 118 GAATTGGTCA-TGCCTCATCTGTACAACCGGAAACCTCAGTAGCGTCGAATTCTAACCCT 176
| ||||| | ||| |||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 157 GCTTTGGT-ATTGCTTCATCTATACAACCGGAAACCTCAGTATCGTCGAATTCTAACCCT 215
Query 177 AATCCCGGCGAAACAATTGCTGTATCGGAAGTTGAGATTATCGACGTATTTGGCAATCCC 236
|||||||| || | ||| ||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 216 AATCCCGGTGAGAGAATCGCTATATCGGAAGTTGAGATTATCGACGTTTTTGGTAATCCC 275
Query 237 CAGCCTACACCGCCGGATTCTAGTATTCCTACGCCGTATCCGGTTTATCCGTCGGAGTCA 296
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 276 CAGCCTACACCGCCGGATTCTAGTATTCCTACACCGTATCCGGTTTATCCGTC---G--- 329
Query 297 GAGTCGGAGTTGGTGAGAGGAAATAACTATGAATCGCCGATCAGTGAGGTTCTTTCTCGA 356
||||| | ||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 330 GAGTC--A----GTGAGCGGCAATGACTATGAATCGCCGATCAGTGAGGTTCTTTCTCGA 383
Query 357 ATGGGGATTAAATTGAAGAGGGAGTGGTGGGTATCTTGTCTTTCTGGACTTGAAACTTCA 416
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 384 ATGGGGATTAAATTGAAGAGGGAGTGGTGGGTATCTTGTCTTTCAGGACTTGAAACTTCA 443
Query 417 ATTCCACAATTTTCGTACCTCGATGTTGCAGCTAAAGCTAAGCATTGCTTTGAGCAGTTT 476
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 444 ATTCCACAATTTTCCTACCTCGATGTTGCAGCTAAAGCTAAGCATTGCTTCGAGCAGTTT 503
Query 477 ATGTTTTCCGATGTGAATTTATGCGGAGCTGGTGTTCTTCCTCGGAATGTTGCGTCTATG 536
||||||| |||| ||||||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct 504 ATGTTTTTCGATATGAATTTATGCGGAGGTGGTGTTCTTCCTCCGAACGTTGCGTCTATG 563
Query 537 AATCTTATAGAACTCGCTGGTCCGTTTGTTCTGCAGGTTGATGAGATTGTTAACATTGGC 596
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 AATCGTATAGAACTCGCTGGTCCGTTTGTTCTGCAGGTTGATGAGATTGTTAACATTGGC 623
Query 597 TGCCCACTCAAAGGGAGGTACGAAAATGCTAATGCAGGGCTTAAGAGGTGCCTTAAGCTC 656
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 624 TGCCCACTCAAAGGGAGGTATGAGAATGCTAATGCAGGGCTTAAGAGGTGCCTTAAGCTG 683
Query 657 TCCATGACAGATGGTGTTCAACGCGTTTTTGGTATGGAATACAGGCCTATTAAAGATCTT 716
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TCTATGACAGATGGTGTTCAACGCGTTTTTGGTATGGAATACAGGCCTATTAAAGATCTT 743
Query 717 CAAGTCTTGGCTCCTGCTGGTTTAAAGGTTGTTGTATCTAGTGTACAAGTTCGGCATGGG 776
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 744 CAAGTCTTGGCTCCTGCTGGTTTAAAGATTGTTGTATCTAGTGTACAAGTTCGGCATGGG 803
Query 777 CTTTTAATGCTAGTACCTGAGATTGTAGAAGTTTTAGGAGGGATGGTTGAAGAACTAGAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 CTTTTAATGCTAGTACCTGAGATTGTAGAAGTTTTAGGAGGGATGGTTGAAGAACTAGAA 863
Query 837 GAAGCACGAAAGCGTCTGGTTGTTGAAGTAAACAAACCTCCAAGAGGAAAAAG 889
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 GAAGCACGAAAGCGTCTGGTTGTTGAAGTAAACAAACCTCCAAGAGGAAAAAG 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97238455665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5