BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951157 Length=1963 Score E Sequences producing significant alignments: (Bits) Value AT5G63540.2 | Symbols: ATRMI1, BLAP75, RMI1 | Domain of unknown... 1458 0.0 > AT5G63540.2 | Symbols: ATRMI1, BLAP75, RMI1 | Domain of unknown function (DUF1767) | chr5:25440783-25444438 REVERSE LENGTH=2349 Length=2349 Score = 1458 bits (789), Expect = 0.0 Identities = 1014/1114 (91%), Gaps = 50/1114 (4%) Strand=Plus/Plus Query 890 AACAAGGATAGGAGTGGTTCCTTCATTGACAACCAGAGCAACCCTAGCTGCGTGGTCGC- 948 ||||||| |||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 1016 AACAAGGGTAGGAGTGGTTCCTTCTTTAACAACCAGAGCAACTCTAGCTGCGTGGTCGCT 1075 Query 949 ---T----A--A-A-TGG----C----A-ATGATACTGGTAATCATGTAGATAGTTCTAC 988 | | | | ||| | | |||||||||||||||||||| |||||||| | Sbjct 1076 AAATGGCAATGATACTGGTAATCATGTACATGATACTGGTAATCATGTAAATAGTTCTGC 1135 Query 989 CTCGGGCAATGCTAGTCACGCTCAGGCCAATCCTCAAGGCATACCCGTAAATGTAACGAG 1048 ||||||||||||||||||| |||| ||||| |||||||||||||||| |||||||||| Sbjct 1136 CTCGGGCAATGCTAGTCACACTCAAGCCAA---TCAAGGCATACCCGTACATGTAACGAG 1192 Query 1049 AACTCACATTAGTTCACGGGCGATGGATGAGCATCCTGCTTCTACCAATGTGGAAGCTAC 1108 |||||||| ||||||||||||||||||||| | || ||||||||||||||||| |||||| Sbjct 1193 AACTCACAATAGTTCACGGGCGATGGATGAACCTCTTGCTTCTACCAATGTGGGAGCTAC 1252 Query 1109 TGTTTCTAGGGTTGAGCATATGCAGATTGATACTGCTTCTGCGCATGGGGAAAGAACGTT 1168 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1253 TGTTTCAAGGGTTGAGCATATGCAGATTGATACTGCTTCTGCGCACGGGGAAAGAACGTT 1312 Query 1169 TTCTGGTATACACTCAACTTCTAGTAACATTCACCG-GCCAGCATCCACA----G--CTG 1221 ||||| |||||| ||||||||||||||||||||||| | ||||||||||| | ||| Sbjct 1313 TTCTGATATACATTCAACTTCTAGTAACATTCACCGAG-CAGCATCCACAGCTGGTACTG 1371 Query 1222 GTACTAGCTGCAGT-G-G--T--A------CAAGATCTTTTTCCAACAACGTTGGCAGAA 1269 |||||||||||||| | | | | ||||||||||| |||||||||||||| ||| Sbjct 1372 GTACTAGCTGCAGTGGTGCCTGCAGTGGTGCAAGATCTTTTGCCAACAACGTTGGCGGAA 1431 Query 1270 GTACATTGGATCAACAAACTTCTAACGTGACTTCATTTGTTGAAGAAATGCATATTGACA 1329 | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1432 ATTCATTGGAT---CAAACATCTAACGTGACTTCATTTGTTGAAGAAATGCATATTGACA 1488 Query 1330 CGGGTCGTGTAAGAGATACAACGTCTCATGTATATGGTTCAGGTTCAGGCGGAGTAGCAG 1389 | ||||||||||| ||||||||| ||||| |||||||||||| ||||||||| ||||| Sbjct 1489 CTGGTCGTGTAAGGGATACAACGACTCATATATATGGTTCAGATTCAGGCGGTGTAGC-- 1546 Query 1390 ATGCAGAAGTCAGTAATAAAATTGTCGATTTGGAAGGCCCTTCTGTGATGTCTACAAATA 1449 | |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1547 A-GCAGAATTCAGTAATATGGTTGTCGATTTGGAAGGCCCTTCTGTGCTGTCTACAAATA 1605 Query 1450 CAGAGAAGCCTTTCACTTACTTAGCCGAGTTGTCTCAAAAATGGGCAGTTATGAAAGATA 1509 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1606 CAGAGAAACCTTTCACATACTTAGCCGAGTTGTCTCAAAAATGGGCAGTTATGAAAGATA 1665 Query 1510 CCATACATTTTGTTCAAGGAAGGATCAAGTGCTTTCTAACTGGAGTGAAGAAATTCCAGT 1569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1666 CCATACATTTTGTTCAAGGAAGGATCAAGTGCTTTCTAACTGGAGTGAAGAAATTCCAGT 1725 Query 1570 TCAAGCAACAGTCTACGTATGAGCTTCTATGCTACGTTGATGATGGAAGTCTCATCTGTG 1629 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1726 TCAAGCAACAGTCTACGTATGAGCTTCTATGCTATGTTGATGATGGTAGTCTCATCTGTG 1785 Query 1630 AGATCTTGCTCCATAACGATGTTGTACAAAAAAGGATAGGACATACATCCATGGAAGTCA 1689 |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 1786 AGATTTTGCTCCATAACGACGTTGTACAAAAAAGGATAGGACATTCATCCATGGAAGTCA 1845 Query 1690 CAGCTGCTCTTTCCTCTTCAGCACCAACATCAGTAAATGCCATGATGAAAGAGAAACTGA 1749 |||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 1846 CAGCTGCTCTTTCCTCGTCAGCTCCAACATCACTAAATGCCATGATGAAAGAGAAACTGA 1905 Query 1750 AACGCTTCCAGTTGTTTCTCGCTGACTTCGAGGGAATAATGATGGTAGAAATGAACAGAT 1809 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 1906 AACGCTTCCAGTTGTTTCTCGCTGACTTTGAGGGAATAATGGTGGTAGAAATGAACAGAT 1965 Query 1810 CGTCGCAATATCCAGTAGCTATTGAAATGAATCAGGGATGTTCGCTAACCGATGCTCGGT 1869 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1966 CGTCGCAATATCCAGTAGCTATCGAAATGAATCAGGGATGTTCGCTAACCGATGCTCGGT 2025 Query 1870 TACTCTTGGAAAGAATCAAATCTTCTTCAAGAACATCCTCAAGCTTAAATCCAGTTGTTG 1929 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2026 TACTCTTGGACAGAATCAAATCTTCTTCAAGAACATCCTCAAGCTTAAATCCAGTTGTTG 2085 Query 1930 TTCTATCCCCTTGATCCAGTAGTCAACTAAAAGC 1963 |||| |||||||||||||||| |||||||||||| Sbjct 2086 TTCTGTCCCCTTGATCCAGTACTCAACTAAAAGC 2119 Score = 1312 bits (710), Expect = 0.0 Identities = 836/893 (94%), Gaps = 24/893 (3%) Strand=Plus/Plus Query 1 CCTAAATTTCGCCGGCG-A-AAATGCGTAGACGACGCCTGCAACTCCGGTACTCCTCCGA 58 ||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| Sbjct 44 CCTAAATTTCGCCGGCGAAGAAATGCGTAGACGGCGCCTGCAACTCCGGTACTCCTCCGA 103 Query 59 CgaagaagaagaagaaggagaagaaACTGGAACAAGCGGAATTGGTGATTCT-TCTCAGA 117 | |||||||||| | ||| |||||||||||||||||| ||||||||||| | ||||| Sbjct 104 C---GAAGAAGAAG-A--AGATGAAACTGGAACAAGCGGAGTTGGTGATTCTGT-TCAGA 156 Query 118 GAATTGGTCA-TGCCTCATCTGTACAACCGGAAACCTCAGTAGCGTCGAATTCTAACCCT 176 | ||||| | ||| |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 157 GCTTTGGT-ATTGCTTCATCTATACAACCGGAAACCTCAGTATCGTCGAATTCTAACCCT 215 Query 177 AATCCCGGCGAAACAATTGCTGTATCGGAAGTTGAGATTATCGACGTATTTGGCAATCCC 236 |||||||| || | ||| ||| ||||||||||||||||||||||||| ||||| |||||| Sbjct 216 AATCCCGGTGAGAGAATCGCTATATCGGAAGTTGAGATTATCGACGTTTTTGGTAATCCC 275 Query 237 CAGCCTACACCGCCGGATTCTAGTATTCCTACGCCGTATCCGGTTTATCCGTCGGAGTCA 296 |||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 276 CAGCCTACACCGCCGGATTCTAGTATTCCTACACCGTATCCGGTTTATCCGTC---G--- 329 Query 297 GAGTCGGAGTTGGTGAGAGGAAATAACTATGAATCGCCGATCAGTGAGGTTCTTTCTCGA 356 ||||| | ||||| || ||| ||||||||||||||||||||||||||||||||||| Sbjct 330 GAGTC--A----GTGAGCGGCAATGACTATGAATCGCCGATCAGTGAGGTTCTTTCTCGA 383 Query 357 ATGGGGATTAAATTGAAGAGGGAGTGGTGGGTATCTTGTCTTTCTGGACTTGAAACTTCA 416 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 384 ATGGGGATTAAATTGAAGAGGGAGTGGTGGGTATCTTGTCTTTCAGGACTTGAAACTTCA 443 Query 417 ATTCCACAATTTTCGTACCTCGATGTTGCAGCTAAAGCTAAGCATTGCTTTGAGCAGTTT 476 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 444 ATTCCACAATTTTCCTACCTCGATGTTGCAGCTAAAGCTAAGCATTGCTTCGAGCAGTTT 503 Query 477 ATGTTTTCCGATGTGAATTTATGCGGAGCTGGTGTTCTTCCTCGGAATGTTGCGTCTATG 536 ||||||| |||| ||||||||||||||| |||||||||||||| ||| |||||||||||| Sbjct 504 ATGTTTTTCGATATGAATTTATGCGGAGGTGGTGTTCTTCCTCCGAACGTTGCGTCTATG 563 Query 537 AATCTTATAGAACTCGCTGGTCCGTTTGTTCTGCAGGTTGATGAGATTGTTAACATTGGC 596 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 564 AATCGTATAGAACTCGCTGGTCCGTTTGTTCTGCAGGTTGATGAGATTGTTAACATTGGC 623 Query 597 TGCCCACTCAAAGGGAGGTACGAAAATGCTAATGCAGGGCTTAAGAGGTGCCTTAAGCTC 656 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 624 TGCCCACTCAAAGGGAGGTATGAGAATGCTAATGCAGGGCTTAAGAGGTGCCTTAAGCTG 683 Query 657 TCCATGACAGATGGTGTTCAACGCGTTTTTGGTATGGAATACAGGCCTATTAAAGATCTT 716 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 684 TCTATGACAGATGGTGTTCAACGCGTTTTTGGTATGGAATACAGGCCTATTAAAGATCTT 743 Query 717 CAAGTCTTGGCTCCTGCTGGTTTAAAGGTTGTTGTATCTAGTGTACAAGTTCGGCATGGG 776 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 744 CAAGTCTTGGCTCCTGCTGGTTTAAAGATTGTTGTATCTAGTGTACAAGTTCGGCATGGG 803 Query 777 CTTTTAATGCTAGTACCTGAGATTGTAGAAGTTTTAGGAGGGATGGTTGAAGAACTAGAA 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 804 CTTTTAATGCTAGTACCTGAGATTGTAGAAGTTTTAGGAGGGATGGTTGAAGAACTAGAA 863 Query 837 GAAGCACGAAAGCGTCTGGTTGTTGAAGTAAACAAACCTCCAAGAGGAAAAAG 889 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 864 GAAGCACGAAAGCGTCTGGTTGTTGAAGTAAACAAACCTCCAAGAGGAAAAAG 916 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97238455665 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5