BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951166
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63610.1 | Symbols: HEN3, CDKE;1, ATCDK8 | cyclin-dependent ... 2305 0.0
> AT5G63610.1 | Symbols: HEN3, CDKE;1, ATCDK8 | cyclin-dependent
kinase E;1 | chr5:25463437-25465897 REVERSE LENGTH=1901
Length=1901
Score = 2305 bits (1248), Expect = 0.0
Identities = 1368/1427 (96%), Gaps = 4/1427 (0%)
Strand=Plus/Plus
Query 8 AATACT-AAAAGCAATGGGAGATGGGAGTTCCACTAGATCCAACAGCTCAAACAGTAGTA 66
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 267 AATACTAAAAAGCAATGGGAGATGGGAGTTCCAGTAGATCCAACAGCTCAAACAGCACTA 326
Query 67 GTGAGAAACCAGAGTGGCTGCAACAGTACAATCTTGTTGGTAAGATTGGTGAAGGCACTT 126
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 327 GTGAGAAACCAGAGTGGCTGCAACAGTACAATCTCGTTGGTAAGATTGGTGAAGGCACTT 386
Query 127 ATGGTCTTGTTTTCTTGGCTAAAACCAAGACTCCGCCTAAAAGACCAATTGCCATCAAGA 186
||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct 387 ATGGTCTTGTTTTCTTGGCTAGAACCAAGACTCCGCCTAAAAGACCTATTGCTATCAAGA 446
Query 187 AGTTTAAGCAGTCAAAAGATGGAGATGGAGTTTCCCCAACTGCTATCCGCGAGATTATGT 246
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 447 AGTTTAAGCAGTCCAAAGATGGAGATGGAGTTTCCCCGACTGCTATCCGCGAGATCATGT 506
Query 247 TGCTTAGAGAGATTTCCCATGAGAACGTCGTGAAGCTTGTGAATGTCCACATCAATTTTG 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 TGCTTAGAGAGATTTCCCATGAGAACGTCGTGAAGCTTGTGAATGTCCACATCAATTTTG 566
Query 307 CAGACATGTCTCTGTATCTTGCCTTTGATTATGCTGAGTACGATCTCTATGAAATCATCA 366
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 567 CAGACATGTCTCTGTATCTTGCCTTTGATTATGCCGAGTACGATCTCTATGAAATCATCA 626
Query 367 GGCACCACAGAGACAAAGTCGGCCATTCGATAAACACATACACAGTTAAGTCTTTGCTCT 426
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 627 GGCACCACAGAGACAAAGTCGGCCATTCGTTAAACACATACACAGTTAAGTCTTTGCTCT 686
Query 427 GGCAGCTTCTCAACGGATTGAACTATCTTCACAGTAATTGGATTATACACAGAGATTTGA 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 GGCAGCTTCTCAACGGATTGAACTATCTTCACAGTAATTGGATTATACACAGAGATTTGA 746
Query 487 AACCGTCGAATATCTTGGTTATGGGTGAAGGAGAAGAACACGGAATAGTGAAAATAGCTG 546
|||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 747 AACCGTCGAATATCTTGGTTATGGGTGATGCAGAAGAGCACGGAATAGTGAAAATAGCTG 806
Query 547 ATTTCGGGCTCGCAAGGATATATCAAGCTCCGTTGAAACCGCTATCGGATAACGGAGTTG 606
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 807 ATTTCGGGCTCGCAAGGATATATCAAGCTCCGTTGAAACCACTATCGGATAACGGAGTTG 866
Query 607 TGGTCACAATCTGGTACCGAGCACCGGAGCTGCTTCTTGGCTCGAAGCACTACACGAGCG 666
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 867 TGGTCACAATCTGGTACCGAGCACCAGAGCTGCTTCTTGGTTCGAAGCACTACACGAGCG 926
Query 667 CCGTCGATATGTGGGCGGTTGGATGTATATTCGCGGAATTACTAACTCTCAAACCGTTGT 726
| || ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 927 CTGTTGATATGTGGGCAGTTGGGTGTATATTCGCGGAGTTACTAACTCTTAAACCGTTGT 986
Query 727 TTCAAGGAGCAGAAGCGAAATCGTCTCAAAACCCTTTCCAATTAGATCAACTCGACAAGA 786
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 987 TTCAAGGAGCAGAAGCGAAATCGTCTCAAAACCCTTTCCAGTTAGATCAACTTGACAAGA 1046
Query 787 TATTCAAGATCTTAGGCCACCCGACGATGGATAAATGGCCAACACTAGTTAACCTTCCGC 846
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1047 TATTCAAGATCTTAGGCCACCCGACGATGGATAAATGGCCAACACTAGTTAACCTTCCAC 1106
Query 847 ACTGGCAAGGCGATATTCAACACATTCAAGCTCACAAATACGACAGCGTGGGACTCCACA 906
|||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1107 ACTGGCAAAATGATGTTCAACACATTCAAGCTCACAAATACGACAGTGTGGGTCTCCACA 1166
Query 907 ACGTGGTTCACCTGAATCAGAAAAGTCATGCGTATGATCTGTTATCCAAAATGCTGGAAT 966
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1167 ACGTGGTTCACCTGAATCAGAAAAGTCCTGCGTATGATCTGTTATCCAAAATGCTGGAAT 1226
Query 967 ACGATCCGCTAAAGCGGATCACGGCTTCACAAGCACTAGAACACGAGTATTTCCGAGTGG 1026
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1227 ATGATCCTCTAAAGCGGATCACGGCTTCACAAGCACTAGAACACGAGTATTTCCGAATGG 1286
Query 1027 ATCCTCTCCCAGGACGGAACGCATTTGTAGCCACCCAACCGATGGAGAAGAATGTGAGTT 1086
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1287 ATCCTCTCCCAGGACGGAACGCATTTGTAGCCAGCCAACCGATGGAGAAGAATGTGAATT 1346
Query 1087 ACCCAACCCGTCCAGTCGATACAAACACGGATTTCGAAGGCACGACGAGCATCAATCCGC 1146
||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1347 ACCCAACTCGTCCAGTAGATACAAACACCGATTTCGAAGGCACGACAAGCATCAATCCGC 1406
Query 1147 CTCAAGCGGTAGCATCAGGAAACGTAGCAGGGAACATGGCAGGGGCTCATGGAATGGGCA 1206
||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1407 CTCAAGCAGTAGCAGCAGGAAACGTAGCAGGGAACATGGCAGGAGCTCATGGAATGGGCA 1466
Query 1207 ATAGATCGATGCCAAGACCAATGGTTGCACATAACATGCAGAGGATGCAAC---CTCAAG 1263
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1467 GTAGATCGATGCCAAGACCAATGGTTGCACATAACATGCAGAGGATGCAGCAATCTCAAG 1526
Query 1264 GCATGATGGCTTATAATTTTCCGGCGCAGGCGGGGCTGAACCCGAGTGTTCCACTGCAGC 1323
||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||
Sbjct 1527 GCATGATGGCTTATAATTTCCCGGCACAGGCAGGGCTTAACCCGAGTGTTCCGCTGCAGC 1586
Query 1324 AGCAGCGCGGGATGGCTCAACCGCACCAGCAGCAACAGCTAAGAAGGAAAGATCCCGGAA 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 AGCAGCGCGGGATGGCTCAACCGCACCAGCAGCAACAGCTAAGAAGGAAAGATCCCGGAA 1646
Query 1384 TGGGAATGTCAGGTTATGCACCTCCTAACAAATCCAGACGCCTCTAA 1430
|||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1647 TGGGTATGTCAGGTTACGCACCTCCTAACAAATCCAGACGCCTCTAA 1693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71535776625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5