BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951172
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63650.1 | Symbols: SNRK2-5, SNRK2.5, SRK2H | SNF1-related p... 1753 0.0
AT1G10940.2 | Symbols: | Protein kinase superfamily protein | ... 520 2e-146
> AT5G63650.1 | Symbols: SNRK2-5, SNRK2.5, SRK2H | SNF1-related
protein kinase 2.5 | chr5:25481517-25483719 REVERSE LENGTH=1421
Length=1421
Score = 1753 bits (949), Expect = 0.0
Identities = 1061/1114 (95%), Gaps = 12/1114 (1%)
Strand=Plus/Plus
Query 9 GAGGAAGAAGAGATGGATAAGTATGAGGTTGTGAAGGATTTGGGAGCTGGGAATTTTGGT 68
|||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 213 GAGGAAGAAGTGATGGACAAGTATGAGGTTGTGAAGGATTTGGGAGCTGGAAATTTTGGT 272
Query 69 GTGGCTCGTCTTCTTAGACACAAAGAGACTAAAGAACTCGTTGCCATGAAATATATTGAG 128
||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||
Sbjct 273 GTGGCTCGTCTTCTTAGACACAAAGAGACCAAAGAGCTCGTTGCTATGAAATACATTGAG 332
Query 129 AGAGGTCGCAAGATTGATGAGAATGTTGCGAGAGAGATTATCAATCATAGATCACTTAGG 188
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 333 AGAGGTCGCAAGATTGATGAGAATGTGGCAAGAGAGATTATCAATCATAGATCACTTAGG 392
Query 189 CATCCTAATATCATCAGATTCAAGGAGGTGGTTCTGACTCCAACTCATCTTGCTATTGTA 248
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 393 CATCCTAATATCATCAGATTCAAGGAGGTGATTCTGACTCCAACTCATCTTGCAATTGTA 452
Query 249 ATGGAATATGCTTCTGGAGGAGAGCTCTTTGAAAGAATCTGTAATGCTGGTAGATTCAGT 308
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 ATGGAGTATGCTTCTGGAGGAGAGCTCTTTGAAAGAATCTGTAATGCTGGTAGATTCAGT 512
Query 309 GAAGCTGAGGCTAGATACTTCTTTCAGCAGTTGATTTGTGGCGTGGATTACTGTCATTCA 368
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 513 GAAGCTGAGGCTAGATACTTCTTTCAGCAGCTGATTTGTGGCGTGGATTACTGTCATTCA 572
Query 369 CTGCAAATATGTCATAGAGATTTGAAGCTTGAGAACACACTGCTTGATGGTAGCCCTGCC 428
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 573 CTGCAAATATGTCATAGAGATTTGAAGCTTGAGAATACACTGCTTGATGGTAGTCCAGCC 632
Query 429 CCGCTTCTGAAAATCTGTGATTTTGGTTACTCCAAGTCATCTCTGCTTCACTCTAGACCT 488
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 CCGCTTTTGAAAATCTGTGATTTTGGTTACTCCAAGTCATCTCTGCTTCACTCTAGACCT 692
Query 489 AAATCAACTGTTGGGACTCCAGCTTACATCGCACCTGAAGTTCTTTCCCGAAGAGAATAT 548
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 693 AAATCAACTGTTGGTACTCCAGCTTATATCGCACCTGAAGTTCTTTCCCGAAGAGAATAT 752
Query 549 GACGGAAAGCATGCGGATGTTTGGTCCTGTGGTGTGACTCTTTATGTGATGTTGGTTGGA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 753 GACGGAAAGCATGCGGATGTTTGGTCCTGTGGTGTGACTCTTTATGTGATGTTAGTTGGA 812
Query 609 GGTTATCCGTTTGAAGACCCCGATGATCCGAGAAACTTCAGGAAAACAATCCAACGTATA 668
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 813 GGTTATCCGTTTGAAGACCCGGATGATCCGAGAAACTTCAGGAAAACAATCCAACGTATA 872
Query 669 ATGGCTGTCCAGTACAAGATCCCGGATTACGTTCACATATCGCAGGAGTGTAAACACCTT 728
||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct 873 ATGGCTGTCCAGTACAAGATCCCGGATTACGTTCATATATCGCAGGAGTGCAGACACCTT 932
Query 729 CTCTCTCGCATATTTGTCACTAATTCAGCTAAGAGAATCACACTTAAAGAGATCAAGAAG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 CTCTCTCGCATATTTGTCACTAATTCAGCTAAGAGAATCACACTTAAAGAGATCAAGAAG 992
Query 789 CATCCATGGTACTTAAAGAACTTGCCAAAGGAGCTTACAGAGTCTGCTCAAGCAGCGTAC 848
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 993 CATCCATGGTACTTAAAGAACTTGCCAAAGGAGCTTACAGAGCCTGCTCAAGCGGCGTAC 1052
Query 849 TACAAGAGAGAAACCACGAGCTTTTCCCTCCAAAGCGTAGAGGACATAATGAAGATCGTT 908
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 TACAAGAGAGAAACCCCAAGCTTTTCCCTCCAAAGCGTAGAGGACATAATGAAGATCGTT 1112
Query 909 GGAGAAGCAAGGAGTCCAGCCCCGTCTTCTAATGCCGTCAAGGGCTTTGATgaagatgaa 968
|||||||| |||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1113 GGAGAAGCCAGGAATCCAGCTCCGTCTTCTAATGCCGTCAAGGGCTTTGATGATGATGAG 1172
Query 969 gaagatgtggaggacgaggtggaagaagaaga-g--gaaga-g--gaagaggaaga-g-- 1019
|||||||||||||||||||| ||||||||||| | ||||| | |||||||| || |
Sbjct 1173 GAAGATGTGGAGGACGAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAAGAA 1232
Query 1020 gagga-g-g-aagaagaTGAATACGAGAAGCATGTCAAAGAGGCGCATTCTTGCCAAGAT 1076
||||| | | ||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1233 GAGGAAGAGGAAGAAGATGAATACGAGAAGCATGTTAAAGAGGCCCATTCTTGTCAAGAG 1292
Query 1077 CCCCCCAAAGCTTAAGAAACTTTCACTCTGTTGT 1110
|| |||||||||||||||||| ||||||||||||
Sbjct 1293 CCTCCCAAAGCTTAAGAAACTCTCACTCTGTTGT 1326
> AT1G10940.2 | Symbols: | Protein kinase superfamily protein
| chr1:3655813-3658608 REVERSE LENGTH=1791
Length=1791
Score = 520 bits (281), Expect = 2e-146
Identities = 721/927 (78%), Gaps = 55/927 (6%)
Strand=Plus/Plus
Query 18 GAG-ATGGATAAGTATGAGGTTGTGAAGGATTTGGGAGCTGGGAATTTTGGTGTGGCTC- 75
||| ||||| ||||| ||| | ||||| || | || |||||||||||||| || || |
Sbjct 435 GAGAATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTTGGAGTTGC-CA 493
Query 76 GTCTTC-T-TA-GACACAAAGAGACTAAAGAACTCGTTGCCATGAAATATATTGAGAGAG 132
| | || | | | || ||| | |||| ||||| ||||||||||| || || ||| | |
Sbjct 494 GGC-TCATGAAGGTCA-AAA-ACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTG 550
Query 133 GTCGC-AAGATTGATGAGAATGTTGCGAGAGAGATTATCAATCATAGATCACTTAGGCAT 191
||| | ||||||||||||||||| || |||||||| || ||||| ||||||||| | |||
Sbjct 551 GTC-CTAAGATTGATGAGAATGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCAT 609
Query 192 CCTAATATCATCAGATTCAAGGAGGTGGT-TCTGACTCCAACTCATCTTGCTATTGTAAT 250
|| ||||| ||| | |||||||||||||| | |||||||||| |||||||| |||| ||
Sbjct 610 CCGAATATAATCCGGTTCAAGGAGGTGGTGT-TGACTCCAACCCATCTTGCCATTGCCAT 668
Query 251 GGAATATGCTTCTGGAGGAGAGCTCTTTGAAAGAATCTGTAATGCTGGTAGA--T--TCA 306
|||||||||| |||| || || || || || | || || | |||||| ||| | | |
Sbjct 669 GGAATATGCTGCTGGTGGTGAACTATTCGAGCGTATATGCAGTGCTGGAAGATTTAGTGA 728
Query 307 -G-T------GAA--G--C-TGAG-------GCTAGATACTTCTTTCAGCAG-TTGATTT 345
| | ||| | | ||| || ||||| ||||| |||||| || || |
Sbjct 729 GGATGAGGAGGAAGGGAACAAGAGAAAACATGCGAGATATTTCTTCCAGCAGCTT-ATAT 787
Query 346 GTGGCG-TGGATTACTGTCATTC-ACTGCAAATATGTCATAGAGATTTGAAGCTTGAGAA 403
|| | | | || || ||| | | |||||||||| ||||||||| ||||||| |||||
Sbjct 788 CAGGTGTTAG-CTATTGCCATGCTA-TGCAAATATGCCATAGAGATCTGAAGCTCGAGAA 845
Query 404 CACACTGCTT-GATGGTAGCCCTGCCCCGCTTCTGAAAATCTGTGATTTTGGTTACTCCA 462
|| || ||| ||||| || ||||| || | |||||||||||||||||||||||| ||||
Sbjct 846 TACGCT-CTTGGATGGAAGTCCTGCTCCACGTCTGAAAATCTGTGATTTTGGTTATTCCA 904
Query 463 AGTCATCTCTGCTTCACTCTAGACCTAAATCAACTGTTGGGACTCCAGCTTACATCGCAC 522
|||| |||||||| |||||||| || |||||||| ||||| |||||||| || || ||||
Sbjct 905 AGTCCTCTCTGCTGCACTCTAGGCCCAAATCAACAGTTGGAACTCCAGCATATATTGCAC 964
Query 523 CTGAAGTTCTTTCCCGAAGAGAATATGACGGAAAGCAT-GCGGATGTTTGGTCCTGTGGT 581
|||| || ||||| |||||||||||||| || ||| || || ||||| ||||| ||||||
Sbjct 965 CTGAGGTCCTTTCTCGAAGAGAATATGATGGCAAG-ATGGCTGATGTATGGTCTTGTGGT 1023
Query 582 GTGACTCTTTATGTGATGTTGGTTGGAGGTTATCCGTTTGAAGACCCCGATGA-TCCGAG 640
|||||||||||||| ||| ||||||||| || || |||||||||| || || || ||
Sbjct 1024 GTGACTCTTTATGTCATGCTGGTTGGAGCATACCCATTTGAAGACCAGGAAGACCCCAAG 1083
Query 641 AAACTTCAGGAAAACAATCCAACGTATAATGGCTGTCCAGTACAAGATCCCGGATTACGT 700
||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 1084 -AACTTCAGGAAAACAATACAAAAAATAATGGCTGTCCAGTACAAGATCCCGGACTACGT 1142
Query 701 TCACATATCGCAGGAGTGTAAACACCTTCTCTCTCGCATATTTGTCACTAATTCAGCT-A 759
|| || || ||||| |||||| | || || || || ||||||||| | |||||| || |
Sbjct 1143 CCATATCTCACAGGATTGTAAAAATCTCCTTTCCCGTATATTTGTCGCCAATTCA-CTCA 1201
Query 760 AGAGAATCAC-ACTTAAAGAGATCAAGAAGCATCCATGGTACTTAAAGAACTTGCCAAAG 818
|||| ||||| | || ||| |||||||| ||| |||||| | ||||||| ||||||| |
Sbjct 1202 AGAGGATCACCA-TTGCAGAAATCAAGAAACATTCATGGTTCCTAAAGAATTTGCCAAGG 1260
Query 819 GAGCTTACAGAGTCTGCTCAAGCAGCGTACTACAAGAGAGA-AACCACGAGCTTTTCCCT 877
|| || |||||| | |||||||| || || | ||||| ||| |||| | | ||| |||||
Sbjct 1261 GAACTCACAGAGACAGCTCAAGCTGCATATTTCAAGAAAGAGAACC-CAACCTTCTCCCT 1319
Query 878 CCAAAGCGTAGAGGACATAATGAAGAT 904
|| | ||| || || || ||||||||
Sbjct 1320 TCAGACCGTTGAAGAGATCATGAAGAT 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54467591325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5