BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951174 Length=1586 Score E Sequences producing significant alignments: (Bits) Value AT5G08560.1 | Symbols: | transducin family protein / WD-40 rep... 555 6e-157 > AT5G08560.1 | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:2770874-2774672 REVERSE LENGTH=2299 Length=2299 Score = 555 bits (300), Expect = 6e-157 Identities = 1009/1333 (76%), Gaps = 122/1333 (9%) Strand=Plus/Plus Query 289 TTCTTGCTACTAGAGCACAAA-TTCTTTGAGGTTCTC-AAGATGCAAAAGGATA-CTGAT 345 |||||||| |||||||| ||| ||||| ||| ||||| ||| || |||| |||| ||||| Sbjct 705 TTCTTGCTCCTAGAGCA-AAAGTTCTTGGAGTTTCTCAAAGTTG-AAAA-GATAGCTGAT 761 Query 346 GCTCT-GGCAACCTTAAGAAAGGAGATGACGCCTCTTGGTTTTAACA-AGAAGCGCGTTC 403 || || || |||||||| || |||||| |||||||| || |||| | | ||||| |||| Sbjct 762 GCGCTACGC-ACCTTAAGGAATGAGATGGCGCCTCTTCGTATTAATACA-AAGCGTGTTC 819 Query 404 ATGAGCTCGCATCCAT-AC-TA-AT-A---TC-AGC----T-T--C-T---GC--CGA-- 440 |||||||||| ||| | | || || | || ||| | | | | | ||| Sbjct 820 ATGAGCTCGCTTCC-TCCCTTATATCACCTTCAAGCTTTATATCACATACCACTTCGACT 878 Query 441 --AGATAAAGAAAGTGTGAATTCAGGGTCTAAGGTTGTGGA-GACACTGCAAAACTTGTT 497 || ||||||||||||||||||| ||||||||||| |||| || |||||||| |||| | Sbjct 879 CCAGGTAAAGAAAGTGTGAATTCAAGGTCTAAGGTTTTGGAGGA-ACTGCAAACCTTGCT 937 Query 498 TCCTCCTGCAACTT-TTATCCCAGAAAAGAGATTGGAGTATCTCA-TAGAGAAGGGC-CT 554 |||| || | || | |||||||||||||| ||||||| | | | | ||||| | || Sbjct 938 TCCTGCTTC-TGTTATAATCCCAGAAAAGAGGTTGGAGTGT-TTAGTTGAGAA-TTCACT 994 Query 555 TGATTA-TGAG-TTGTTTCTCTGTGAGTGCCATAATA-TTCCGAATTGTGATTTGTCCCT 611 | | || | || | |||| |||| | |||||||| || | || |||||||||| | Sbjct 995 TCA-TATTCAGCGGGATTCT-TGTGTTTTCCATAATACTT-TGGATAGTGATTTGTCTTT 1051 Query 612 -AAGCTCTGATCATCATTGTGGGATCCATAAAATTCCTTCTAAGACTG-TACAGACT-TT 668 | ||||||||||| || |||| || ||||||||||| |||||| | |||| | || Sbjct 1052 GTA-TTCTGATCATCAATGCGGGAAGCACCAAATTCCTTCTCAGACTGCT-CAGA-TCTT 1108 Query 669 GAAGAAC-CATACGGATGAAGTCTGGTTCTTGGAATTCTCACATGATGGCAAGTATTTGG 727 | || | ||||| |||||||| ||||||||| |||| |||||| ||||||| ||||||| Sbjct 1109 GGAG-TCACATACCGATGAAGTTTGGTTCTTGCAATTTTCACATAATGGCAAATATTTGG 1167 Query 728 CTTCATCTTCCAAGGAT-AAATCAGCAATTATATGGGAGATCGATGCACAG--GGGAAGT 784 ||||||||||||||||| ||| | |||||||||||||||||| | || ||| ||| | Sbjct 1168 CTTCATCTTCCAAGGATCAAA-CCGCAATTATATGGGAGATC-A-GCGCAGATGGGCACA 1224 Query 785 TTTCGGAGAAGCATAAACTTGTGGGACATGAGAAGCCCGTGGTAATG--GTTTTGTGGAG 842 |||| |||||||| |||||| || || | || ||||| | | || | || ||||| Sbjct 1225 TTTCATTGAAGCATACACTTGTTGGCCACCACAAACCCGT-G-ATTGCCATCTTATGGAG 1282 Query 843 TCCTGATGATAAACAAG-TCGCTACATGTGGAG-AAAATGAGGTTATCAGGA-GCTGGGA 899 |||||||||| |||| || ||||||||||| | || |||||||||| || ||||||| Sbjct 1283 TCCTGATGATCGTCAAGTTC-TTACATGTGGAGCAGAA-GAGGTTATCA-GACGCTGGGA 1339 Query 900 TGTTGAGTCAGGAGAATTTATTCA-ATCGTACGAAAGAA-ATGGTGTTGGTTCTGTTTCT 957 |||||| |||||||| | | |||| || ||| |||| || ||| | || | ||||| Sbjct 1340 TGTTGATTCAGGAGACTGTGTTCACAT-GTATGAAA-AAGGCGGTATCAGTCCCATTTCT 1397 Query 958 TGTGGATGGTTTCATGATGGATCA-GGTATAATTGCTGGGATGACAGACAGAAGCATCTG 1016 || ||||||| || |||||| || || ||||| || |||||||||||| |||||||||| Sbjct 1398 TGCGGATGGTATCCTGATGG-GCAGGGGATAATCGCCGGGATGACAGACCGAAGCATCTG 1456 Query 1017 CTTGTGGAATTTAGATGG--GACTG-AGCTAGTGCATGAGCAAGGTCCACG-GGA-ACAG 1071 | ||||| |||||||||| || | || | ||| || | ||||| || | ||| || Sbjct 1457 CATGTGGGATTTAGATGGTAGAGAGAAG-GAATGC-TG-GAAAGGT-CA-GAGGACTCAA 1511 Query 1072 AAGCTTTCTGATGTAGCCATGACAAATGATGGGAAGTGGCTTGTAAGTG--TGGACAGGG 1129 ||| | || ||| |||| ||||| ||||||| |||||||| ||||||| || | | | Sbjct 1512 AAGGTATCAGATATAGCAATGACGGATGATGGAAAGTGGCTCGTAAGTGTATGCA-AAGA 1570 Query 1130 TGCATGTGATCTCATTGTTTAATAGAGAAACCAGAGCTGTGAGACTGATTA-CAGAGGAA 1188 | | ||||| ||| | ||| |||||||| | | || || |||| | | || ||||||| Sbjct 1571 TTC-CGTGATATCACTATTTGATAGAGAAGCTACAGTTGAGAGA-TTAATAGAAGAGGAA 1628 Query 1189 GACATGATTACCTCGTTCTCGCTGTCGAAAAACAACAAGCATCTTCTGATCAATCTCATT 1248 ||||||||||||||||||||||| ||||| ||||||| || | ||| | || ||| | Sbjct 1629 GACATGATTACCTCGTTCTCGCTTTCGAATGACAACAAATATATCCTGGTAAACCTCCTC 1688 Query 1249 ACCCAG-AAGATCCATGTCTGGAACATTGAAGGCCAACCATATAAAT-GTTTTGA-ATAT 1305 | |||| || |||| | ||||||| |||||||| | || | | || || | || ||| Sbjct 1689 AACCAGGAA-ATCCGTCTCTGGAATATTGAAGGTGACCCC-A-AGATTGTGTCGAGATAC 1745 Query 1306 AATGGCCACAAGCGTAGTCGGTTTATCATCAGGTCATGCTTTGGTGGCTATGAAGACA-G 1364 || |||||||||||| || || |||||||| |||||||||||||| ||| || ||| | Sbjct 1746 AAAGGCCACAAGCGTTCACGATTCATCATCAGATCATGCTTTGGTGGGTAT-AA-ACAAG 1803 Query 1365 CTT-CATCGCCAGTGGGAGTGAAGATTCTCAGGTGTACATATGGATCATACGAAGAT-TA 1422 ||| |||||| || || || || || |||||||| || |||||| || | | ||| || Sbjct 1804 CTTTCATCGCTAGCGGAAGCGAGGACTCTCAGGTATATATATGG--CA--C-A-GATCTA 1857 Query 1423 CAGAAGGAACCTTG-TA-TTGTAT-TGCGAGGACACT-CAGGAGCTGTGAACTGCGTGAG 1478 ||| |||| || || ||| | | | ||| || | ||||||| || ||||||||||| Sbjct 1858 CAG--GGAAG-TTAATAGTTG-AGCTACCAGGCCA-TGCAGGAGCAGTTAACTGCGTGAG 1912 Query 1479 CTGGAACCCGATTAACCTGCATATGTTGGCTTCAGCAAGTGACGATGGAACCATTCGGAT 1538 ||||| ||||| || || || ||||||||||||||||| || |||||||| || |||| Sbjct 1913 CTGGAGCCCGACGAATCTACACATGTTGGCTTCAGCAAGCGATGATGGAACAATAAGGAT 1972 Query 1539 TTGGGGACTTGAC 1551 |||||||||||| Sbjct 1973 ATGGGGACTTGAC 1985 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78312850200 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5