BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951174
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08560.1 | Symbols: | transducin family protein / WD-40 rep... 555 6e-157
> AT5G08560.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:2770874-2774672 REVERSE LENGTH=2299
Length=2299
Score = 555 bits (300), Expect = 6e-157
Identities = 1009/1333 (76%), Gaps = 122/1333 (9%)
Strand=Plus/Plus
Query 289 TTCTTGCTACTAGAGCACAAA-TTCTTTGAGGTTCTC-AAGATGCAAAAGGATA-CTGAT 345
|||||||| |||||||| ||| ||||| ||| ||||| ||| || |||| |||| |||||
Sbjct 705 TTCTTGCTCCTAGAGCA-AAAGTTCTTGGAGTTTCTCAAAGTTG-AAAA-GATAGCTGAT 761
Query 346 GCTCT-GGCAACCTTAAGAAAGGAGATGACGCCTCTTGGTTTTAACA-AGAAGCGCGTTC 403
|| || || |||||||| || |||||| |||||||| || |||| | | ||||| ||||
Sbjct 762 GCGCTACGC-ACCTTAAGGAATGAGATGGCGCCTCTTCGTATTAATACA-AAGCGTGTTC 819
Query 404 ATGAGCTCGCATCCAT-AC-TA-AT-A---TC-AGC----T-T--C-T---GC--CGA-- 440
|||||||||| ||| | | || || | || ||| | | | | | |||
Sbjct 820 ATGAGCTCGCTTCC-TCCCTTATATCACCTTCAAGCTTTATATCACATACCACTTCGACT 878
Query 441 --AGATAAAGAAAGTGTGAATTCAGGGTCTAAGGTTGTGGA-GACACTGCAAAACTTGTT 497
|| ||||||||||||||||||| ||||||||||| |||| || |||||||| |||| |
Sbjct 879 CCAGGTAAAGAAAGTGTGAATTCAAGGTCTAAGGTTTTGGAGGA-ACTGCAAACCTTGCT 937
Query 498 TCCTCCTGCAACTT-TTATCCCAGAAAAGAGATTGGAGTATCTCA-TAGAGAAGGGC-CT 554
|||| || | || | |||||||||||||| ||||||| | | | | ||||| | ||
Sbjct 938 TCCTGCTTC-TGTTATAATCCCAGAAAAGAGGTTGGAGTGT-TTAGTTGAGAA-TTCACT 994
Query 555 TGATTA-TGAG-TTGTTTCTCTGTGAGTGCCATAATA-TTCCGAATTGTGATTTGTCCCT 611
| | || | || | |||| |||| | |||||||| || | || |||||||||| |
Sbjct 995 TCA-TATTCAGCGGGATTCT-TGTGTTTTCCATAATACTT-TGGATAGTGATTTGTCTTT 1051
Query 612 -AAGCTCTGATCATCATTGTGGGATCCATAAAATTCCTTCTAAGACTG-TACAGACT-TT 668
| ||||||||||| || |||| || ||||||||||| |||||| | |||| | ||
Sbjct 1052 GTA-TTCTGATCATCAATGCGGGAAGCACCAAATTCCTTCTCAGACTGCT-CAGA-TCTT 1108
Query 669 GAAGAAC-CATACGGATGAAGTCTGGTTCTTGGAATTCTCACATGATGGCAAGTATTTGG 727
| || | ||||| |||||||| ||||||||| |||| |||||| ||||||| |||||||
Sbjct 1109 GGAG-TCACATACCGATGAAGTTTGGTTCTTGCAATTTTCACATAATGGCAAATATTTGG 1167
Query 728 CTTCATCTTCCAAGGAT-AAATCAGCAATTATATGGGAGATCGATGCACAG--GGGAAGT 784
||||||||||||||||| ||| | |||||||||||||||||| | || ||| ||| |
Sbjct 1168 CTTCATCTTCCAAGGATCAAA-CCGCAATTATATGGGAGATC-A-GCGCAGATGGGCACA 1224
Query 785 TTTCGGAGAAGCATAAACTTGTGGGACATGAGAAGCCCGTGGTAATG--GTTTTGTGGAG 842
|||| |||||||| |||||| || || | || ||||| | | || | || |||||
Sbjct 1225 TTTCATTGAAGCATACACTTGTTGGCCACCACAAACCCGT-G-ATTGCCATCTTATGGAG 1282
Query 843 TCCTGATGATAAACAAG-TCGCTACATGTGGAG-AAAATGAGGTTATCAGGA-GCTGGGA 899
|||||||||| |||| || ||||||||||| | || |||||||||| || |||||||
Sbjct 1283 TCCTGATGATCGTCAAGTTC-TTACATGTGGAGCAGAA-GAGGTTATCA-GACGCTGGGA 1339
Query 900 TGTTGAGTCAGGAGAATTTATTCA-ATCGTACGAAAGAA-ATGGTGTTGGTTCTGTTTCT 957
|||||| |||||||| | | |||| || ||| |||| || ||| | || | |||||
Sbjct 1340 TGTTGATTCAGGAGACTGTGTTCACAT-GTATGAAA-AAGGCGGTATCAGTCCCATTTCT 1397
Query 958 TGTGGATGGTTTCATGATGGATCA-GGTATAATTGCTGGGATGACAGACAGAAGCATCTG 1016
|| ||||||| || |||||| || || ||||| || |||||||||||| ||||||||||
Sbjct 1398 TGCGGATGGTATCCTGATGG-GCAGGGGATAATCGCCGGGATGACAGACCGAAGCATCTG 1456
Query 1017 CTTGTGGAATTTAGATGG--GACTG-AGCTAGTGCATGAGCAAGGTCCACG-GGA-ACAG 1071
| ||||| |||||||||| || | || | ||| || | ||||| || | ||| ||
Sbjct 1457 CATGTGGGATTTAGATGGTAGAGAGAAG-GAATGC-TG-GAAAGGT-CA-GAGGACTCAA 1511
Query 1072 AAGCTTTCTGATGTAGCCATGACAAATGATGGGAAGTGGCTTGTAAGTG--TGGACAGGG 1129
||| | || ||| |||| ||||| ||||||| |||||||| ||||||| || | | |
Sbjct 1512 AAGGTATCAGATATAGCAATGACGGATGATGGAAAGTGGCTCGTAAGTGTATGCA-AAGA 1570
Query 1130 TGCATGTGATCTCATTGTTTAATAGAGAAACCAGAGCTGTGAGACTGATTA-CAGAGGAA 1188
| | ||||| ||| | ||| |||||||| | | || || |||| | | || |||||||
Sbjct 1571 TTC-CGTGATATCACTATTTGATAGAGAAGCTACAGTTGAGAGA-TTAATAGAAGAGGAA 1628
Query 1189 GACATGATTACCTCGTTCTCGCTGTCGAAAAACAACAAGCATCTTCTGATCAATCTCATT 1248
||||||||||||||||||||||| ||||| ||||||| || | ||| | || ||| |
Sbjct 1629 GACATGATTACCTCGTTCTCGCTTTCGAATGACAACAAATATATCCTGGTAAACCTCCTC 1688
Query 1249 ACCCAG-AAGATCCATGTCTGGAACATTGAAGGCCAACCATATAAAT-GTTTTGA-ATAT 1305
| |||| || |||| | ||||||| |||||||| | || | | || || | || |||
Sbjct 1689 AACCAGGAA-ATCCGTCTCTGGAATATTGAAGGTGACCCC-A-AGATTGTGTCGAGATAC 1745
Query 1306 AATGGCCACAAGCGTAGTCGGTTTATCATCAGGTCATGCTTTGGTGGCTATGAAGACA-G 1364
|| |||||||||||| || || |||||||| |||||||||||||| ||| || ||| |
Sbjct 1746 AAAGGCCACAAGCGTTCACGATTCATCATCAGATCATGCTTTGGTGGGTAT-AA-ACAAG 1803
Query 1365 CTT-CATCGCCAGTGGGAGTGAAGATTCTCAGGTGTACATATGGATCATACGAAGAT-TA 1422
||| |||||| || || || || || |||||||| || |||||| || | | ||| ||
Sbjct 1804 CTTTCATCGCTAGCGGAAGCGAGGACTCTCAGGTATATATATGG--CA--C-A-GATCTA 1857
Query 1423 CAGAAGGAACCTTG-TA-TTGTAT-TGCGAGGACACT-CAGGAGCTGTGAACTGCGTGAG 1478
||| |||| || || ||| | | | ||| || | ||||||| || |||||||||||
Sbjct 1858 CAG--GGAAG-TTAATAGTTG-AGCTACCAGGCCA-TGCAGGAGCAGTTAACTGCGTGAG 1912
Query 1479 CTGGAACCCGATTAACCTGCATATGTTGGCTTCAGCAAGTGACGATGGAACCATTCGGAT 1538
||||| ||||| || || || ||||||||||||||||| || |||||||| || ||||
Sbjct 1913 CTGGAGCCCGACGAATCTACACATGTTGGCTTCAGCAAGCGATGATGGAACAATAAGGAT 1972
Query 1539 TTGGGGACTTGAC 1551
||||||||||||
Sbjct 1973 ATGGGGACTTGAC 1985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78312850200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5