BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951176
Length=392
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63670.1 | Symbols: SPT42 | SPT4 homolog 2 | chr5:25487981-2... 645 0.0
AT5G08565.1 | Symbols: | Transcription initiation Spt4-like pr... 344 3e-94
> AT5G63670.1 | Symbols: SPT42 | SPT4 homolog 2 | chr5:25487981-25489428
FORWARD LENGTH=563
Length=563
Score = 645 bits (349), Expect = 0.0
Identities = 376/389 (97%), Gaps = 1/389 (0%)
Strand=Plus/Plus
Query 3 GAGAGAAAACAAACGATAATGGGAAGCGCACCAGCTCAGATTCCGACTAGTTTCGGCCAT 62
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 14 GAGAGAAAACAAACGATAATGGGAAGCGCACCAGCTCAGATTCCGACTAGCTTCGGCCAT 73
Query 63 GAGCTTAGGGCTTGTCTTCGTTGCCGACTCGTCAAGACCTATGACCAGTTCAGGGACGCT 122
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 74 GAGCTTAGGGCTTGTCTTCGTTGCCGACTCGTCAAGACCTATGACCAGTTTAGAGACGCT 133
Query 123 GGTTGCGAGAATTGCCCTTTCTTCAAGATGGAAGAGGATCATGAGCGTATCGTGGAGGTC 182
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 GGTTGCGAGAATTGTCCTTTCTTCAAGATGGAAGAGGATCATGAGCGTATCGTGGAGGTC 193
Query 183 ACTACCCCTAATTTCAATGGTATAATCTCTGTGATGGATCCAAGTAGAAGCTGGGCTGCT 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 194 ACTACCCCTAATTTCAATGGTATAATCTCTGTGATGGATCCAAGTAGAAGCTGGGCGGCT 253
Query 243 AGGTGGTTAAGAATCGGGAAGTTTGCTCCTGGTTGCTACACTCTTGCGGTCTCAGAGCCA 302
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 254 AGGTGGTTAAGAATCGGGAAGTTTGCTCCTGGTTGCTACACACTTGCTGTCTCAGAGCCA 313
Query 303 CTCCCTGAGGAAATGCAGCACCTATGCCAAGAAGAGCGTGTACAATATGTTCTGCCGAAA 362
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 314 CTCCCTGAGGAAATGCAGCACTTATGCCAAGAGGAGCGTGTACAATATGTTCTGCCGAAA 373
Query 363 CGCATGTGAAGAAAATCCATCAAGAAGAA 391
|||||||||||||| || |||| || |||
Sbjct 374 CGCATGTGAAGAAA-TCTATCACGATGAA 401
> AT5G08565.1 | Symbols: | Transcription initiation Spt4-like
protein | chr5:2775898-2777400 FORWARD LENGTH=663
Length=663
Score = 344 bits (186), Expect = 3e-94
Identities = 311/371 (84%), Gaps = 10/371 (3%)
Strand=Plus/Plus
Query 7 GAAAACAAA-CGATAAT-GG-GAAGCGCACCAGCTCAGATTCCGACTAGTTTCGGCCATG 63
||| ||||| | | ||| || |||||| || || ||||||||||| ||||||||||| |
Sbjct 53 GAAGACAAATC-ACAATGGGAGAAGCG--CCTGCCCAGATTCCGACGAGTTTCGGCCACG 109
Query 64 AGCTTAGGGCTTGTCTTCGTTGCCGACTCGTCAAGACCTATGACCAGTTCAGGGACGCTG 123
||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||| |||
Sbjct 110 AGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGTTTAGGGATTCTG 169
Query 124 GTTGCGAGAATTGCCCTTTCTTCAAGATGGAAGAGGATCATGAGCGTATCGTGGAGGTCA 183
| |||||||| || ||||||||||| || ||||| |||||||| || ||||| || || |
Sbjct 170 GATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGATCATGAACGCATCGTCGATGTTA 229
Query 184 CTAC-CCCTAATTTCAATGGTATAATCTCTGTGATGGATCCAAGTAGAAGCTGGGCTGCT 242
| || ||| || |||||||||||||||||| ||||||||||| | ||||| ||||| ||
Sbjct 230 CAACTCCC-AACTTCAATGGTATAATCTCTATGATGGATCCACGCAGAAGTTGGGCAGCA 288
Query 243 AGGTGGTTAAGAATCGGGAAGTTTGCTCCTGGTTGCTACACTCTTGCGGTCTCAGAGCCA 302
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 289 AGATGGTTAAGAATTGGGAAGTTTGCTCCTGGTTGCTACACTCTTGCTGTCTCAGAGGCA 348
Query 303 CTCCCTGAGGAAATGCAGCACCTATGCCAAGAAG-AGCGTGTACAATATGTTCTGCCGAA 361
||||| |||||||||||| | |||||||| ||| | || || || || |||| || ||
Sbjct 349 CTCCCAGAGGAAATGCAGTTCATATGCCAACAAGCA-CGGGTGCAGTACGTTCCACCCAA 407
Query 362 ACGCATGTGAA 372
||| || ||||
Sbjct 408 ACGTATTTGAA 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18498531632
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5