BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951177
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63680.1 | Symbols: | Pyruvate kinase family protein | chr5... 2604 0.0
AT5G08570.1 | Symbols: | Pyruvate kinase family protein | chr5... 1690 0.0
> AT5G63680.1 | Symbols: | Pyruvate kinase family protein | chr5:25490073-25492752
FORWARD LENGTH=1880
Length=1880
Score = 2604 bits (1410), Expect = 0.0
Identities = 1515/1567 (97%), Gaps = 2/1567 (0%)
Strand=Plus/Plus
Query 2 TTTTTGGAGATTTACGAAAATGTCAAACATAGACATAGAAGGGATATTGAAGGAGCTACC 61
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 107 TTTTTGGAGATTTACAAAAATGTCGAACATAGACATAGAAGGAATATTGAAGGAGCTACC 166
Query 62 TAATGATGGGAGGACTCCTAAGACTAAGATCGTTTGTACTTTAGGTCCTGCGTCTCGGTC 121
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 167 TAATGATGGGAGGACTCCTAAGACTAAGATCGTTTGTACATTAGGTCCTGCGTCTAGGTC 226
Query 122 TGTGACCATGATTGAGAAGCTTCTAAAAGCCGGCATGAATGTTGCTCGATTCAATTTCTC 181
|||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 227 TGTGACAATGATTGAGAAGCTTCTTAAAGCAGGCATGAATGTAGCTCGATTCAATTTCTC 286
Query 182 TCATGGAAGCCATGAGTACCATCAGGAGACTCTTGACAATCTCCGCACCGCTATGCAGAA 241
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TCACGGAAGCCATGAGTACCATCAGGAGACTCTTGACAATCTCCGCACCGCTATGCAGAA 346
Query 242 TACCGGCATTCTCGCTGCTGTTATGCTTGATACAAAGGGGCCTGAGATTCGTACCGGTTT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 TACCGGCATTCTCGCTGCTGTTATGCTTGATACAAAGGGGCCTGAGATTCGTACCGGTTT 406
Query 302 CTTGAAAGATGGGAACCCTATACAACTAAAGGAAGGTCAGGAGATCACAATCACCACTGA 361
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 407 CTTGAAAGATGGGAACCCTATACAACTAAAGGAAGGCCAAGAGATCACAATTACCACTGA 466
Query 362 TTATGACATCAAGGGCGATGAGAAAACGATTTCCATGAGCTACAAAAAGCTTCCAGTGGA 421
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 467 TTATGACATCAAGGGCGATGAGAAAACGATTTCCATGAGCTACAAAAAGCTCCCAGTGGA 526
Query 422 TGTGAAGCCCGGCAATACCATTCTATGTGCAGATGGAAGCATAAGTCTTGCTGTCGTGTC 481
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 527 TGTGAAGCCCGGAAATACCATACTATGTGCAGATGGAAGCATAAGTCTTGCTGTCGTGTC 586
Query 482 ATGTGATCCAAA-GTCTGGGACTGTTATATGTCGATGTGAAAATACAGCGATGCTAGGTG 540
|||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 587 ATGTGATCCAAACG-CTGGGACTGTTATATGTCGATGTGAAAATACAGCCATGCTAGGTG 645
Query 541 AAAGAAAGAATGTGAATCTTCCTGGTGTTGTTGTTGATCTCCCCACATTGACTGACAAGG 600
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 646 AAAGAAAAAATGTGAATCTCCCAGGTGTTGTTGTTGATCTCCCCACATTGACTGACAAGG 705
Query 601 ATGTAGAAGATATTCTTAAATGGGGTGTTCCAAACAACATCGATATGATTGCTCTTTCGT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 706 ATGTAGAAGATATTCTTAAATGGGGTGTTCCAAACAACATCGATATGATTGCTCTTTCAT 765
Query 661 TTGTTCGCAAAGGTTCAGATCTTGTTAATGTCCGGAAAGTACTTGGATCACATTCTAAGA 720
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 766 TTGTTCGCAAAGGTTCAGATCTTGTTAATGTCCGGAAAGTCCTTGGATCACATTCCAAGA 825
Query 721 GTATAATGTTGATGTCGAAGGTTGAGAACCAGGAAGGAGTGCTGAATTTCGATGAGATCT 780
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 826 GTATAATGTTGATGTCGAAGGTTGAGAACCAAGAAGGAGTCCTGAATTTCGATGAGATTT 885
Query 781 TGCGTGAAACTGATGCATTCATGGTTGCCCGTGGTGATCTCGGGATGGAGATTCCGATAG 840
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 886 TGCGTGAAACTGATGCATTCATGGTTGCTCGTGGTGATCTTGGGATGGAGATTCCGATAG 945
Query 841 AGAAGATTTTCTTGGCTCAAAAGATGATGATCTACAAGTGTAACCTTGCGGGTAAACCAG 900
||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 946 AGAAGATCTTCTTGGCTCAGAAGATGATGATCTACAAGTGTAACCTTGCAGGTAAACCGG 1005
Query 901 TGGTCACAGCCACTCAAATGCTCGAGTCTATGATCAAATCACCACGGCCAACACGAGCTG 960
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1006 TGGTCACAGCCACTCAAATGCTCGAGTCGATGATCAAATCACCACGGCCAACACGAGCAG 1065
Query 961 AAGCCACAGATGTAGCAAACGCAGTTCTCGATGGCACTGACTGTGTGATGCTCAGCGGAG 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1066 AAGCCACAGATGTAGCAAACGCAGTTCTCGATGGCACTGACTGTGTGATGCTTAGCGGAG 1125
Query 1021 AAAGTGCTGCAGGAGCTTACCCGGAAATAGCAGTGAAAACAATGGCTAAAATCTGCATCG 1080
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1126 AAAGTGCTGCAGGAGCTTACCCTGAAATAGCAGTGAAAACAATGGCTAAAATCTGCATCG 1185
Query 1081 AGGCGGAATCATCGCTTGACTACAACACAATCTTCAAGGAAATGATTAGAGCAACTCCGC 1140
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1186 AGGCGGAATCATCGCTTGACTACAACACAATCTTCAAGGAGATGATTAGAGCAACTCCAC 1245
Query 1141 TTCCAATGAGCACACTTGAGAGTCTTGCATCATCAGCTGTACGAACTGCAAACAAAGCCA 1200
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1246 TTCCAATGAGCACTCTTGAGAGTCTTGCATCATCAGCTGTACGAACGGCAAACAAAGCCA 1305
Query 1201 AAGCCAAACTCATCATCGTGTTGACCCGAGGAGGTACAACAGCTAAACTGGTGGCTAAGT 1260
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1306 AAGCCAAACTCATCATCGTGTTGACCAGAGGAGGTACAACAGCTAAACTGGTGGCCAAGT 1365
Query 1261 ATAGACCGGCTGTTCCAATTCTATCGGTGGTTGTTCCGGTCTTCACCAGCGATACCTTTA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1366 ATAGACCGGCTGTTCCAATTCTATCGGTGGTTGTTCCGGTCTTCACCAGCGATACGTTTA 1425
Query 1321 ACTGGAGTTGCAGCGATGAGTCACCGGCAAGGCATAGTTTGATATATAGAGGTCTGATTC 1380
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1426 ACTGGAGTTGCAGCGATGAGTCACCGGCGAGGCATAGTTTGATATATAGAGGTCTGATAC 1485
Query 1381 CGGTTTTGGGTGAAGGATCTGCAAAAGCAACTGATAGTGAATCTACAGAAGAGATTATTG 1440
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1486 CGGTTTTGGGTGAAGGATCTGCAAAAGCAACTGATAGTGAATCCACAGAGGAGATTATTG 1545
Query 1441 AGTCTGCTTTGAAGTCAGCGACAGAGAAAGGACTGTGTAACCATGGTGATGCTGTGGTGG 1500
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 AATCTGCTTTGAAGTCAGCGACAGAGAAAGGACTGTGTAACCATGGTGATGCTGTGGTGG 1605
Query 1501 CTCTGCACCGTATTGGAGCTGCTTCGGTTATCAAGATCTGTGTGGTGAAGTGATTATGCT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1606 CTCTGCACCGTATTGGAGCTGCTTCGGTTATCAAGATCTGTGTGGTGAAGTGATTTTTCT 1665
Query 1561 ACTAAAT 1567
|||||||
Sbjct 1666 ACTAAAT 1672
> AT5G08570.1 | Symbols: | Pyruvate kinase family protein | chr5:2778000-2780441
FORWARD LENGTH=1819
Length=1819
Score = 1690 bits (915), Expect = 0.0
Identities = 1338/1545 (87%), Gaps = 18/1545 (1%)
Strand=Plus/Plus
Query 18 AAAATGTCAAACATAGACATAGAAGGGATATTGAAGGAGCTACCTAATGATGGGAGGACT 77
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 143 AAAATGTCGAACATAGACATAGAAGGGATCTTGAAGGAGCTACCTAATGATGGGAGGA-T 201
Query 78 -CCTAAGACTAAGATCGTTTGTACTTTAGGTCCTGCGTCTCGGTCTGTGACCATGATTGA 136
|| ||||| ||||| ||||| || ||||| || || ||||| |||| ||||||| ||
Sbjct 202 CCCAAAGACGAAGATAGTTTGCACATTAGGACCAGCTTCTCGCACTGTTTCCATGATCGA 261
Query 137 GAAGCTTCTAAAAGCCGGCATGAATGTTGCTCGATTCAATTTCTCTCATGGAAGCCATGA 196
|||||| | |||||||| |||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct 262 AAAGCTTTTGAAAGCCGGTATGAATGTGGCTCGCTTCAACTTCTCACATGGAAGCCATGA 321
Query 197 GTACCATCAGGAGACTCTTGACAATCTCCGCACCGCTATGCAGAATACCGGCATTCTCGC 256
|||||||| ||||| || ||||| |||||| | |||||||| |||||||||||||||||
Sbjct 322 ATACCATCAAGAGACACTCGACAACCTCCGCTCTGCTATGCATAATACCGGCATTCTCGC 381
Query 257 TGCTGTTATGCTTGATACAAAGGGGCCTGAGATTCGTACCGGTTTCTTGAAAGATGGGAA 316
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 382 TGCTGTCATGCTTGATACTAAGGGGCCTGAGATTCGTACTGGTTTCTTGAAAGATGGGAA 441
Query 317 CCCTATACAACTAAAGGAAGGTCAGGAGATCACAATCACCACTGATTATGACA-TCAAGG 375
|||||||||||| ||||||||||| ||||| || || |||||||||||||||| |||| |
Sbjct 442 CCCTATACAACTGAAGGAAGGTCAAGAGATTACTATAACCACTGATTATGACATTCAA-G 500
Query 376 GCGATGAGA-AAACGATTTCCATGAGCTACAAAAAGCTTCCAGTGGATGTGAAGCCCGGC 434
| || || | |||||| ||||||||||| |||||||| || ||||||||||||||||
Sbjct 501 GAGACGA-ATCAACGATATCCATGAGCTATAAAAAGCTGCCTTTGGATGTGAAGCCCGGA 559
Query 435 AATACCATTCTATGTGCAGATGGAAGCATAAGTCTTGCTGTCGTGTCATGTGATCCAAAG 494
|| ||||| || ||||||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct 560 AACACCATACTCTGTGCAGATGGAAGCATAAGTCTAGCTGTCTTGTCATGTGATCCTGAG 619
Query 495 TCTGGGACTGTTATATGTCGATGTGAAAA-TACAGCGATGCTAGGTGAAAGAAAGAATGT 553
||||| ||||||| || || |||||||| | | |||||||| |||||||||||||||||
Sbjct 620 TCTGGAACTGTTAGGTGCCGGTGTGAAAACT-CGGCGATGCTTGGTGAAAGAAAGAATGT 678
Query 554 GAATCTTCCTGGTGTTGTTGTTGATCTCCCCACATTGACTGACAAGGATGTAGAAGATAT 613
|||||||||||| |||||||||||||| ||||| ||||| || |||||| | ||||||||
Sbjct 679 GAATCTTCCTGGCGTTGTTGTTGATCTTCCCACTTTGACAGATAAGGATATTGAAGATAT 738
Query 614 TCTTAAATGGGGTGTTCCAAACAACATCGATATGATTGCTCTTTCGTTTGTTCGCAAAGG 673
||| ||||||||||| |||| ||| ||||||||||||||||||||||| || |||||
Sbjct 739 TCTCGGTTGGGGTGTTCCGAACAGCATTGATATGATTGCTCTTTCGTTTGTCCGTAAAGG 798
Query 674 TTCAGATCTTGTTAATGTCCGGAAAGTACTTGGATCACATTCTAAGAGTATAATGTTGAT 733
||| ||||||||||||||||| || || |||||||| ||| |||| || |||||| | ||
Sbjct 799 TTCGGATCTTGTTAATGTCCGCAAGGTTCTTGGATCTCATGCTAAAAGCATAATGCTCAT 858
Query 734 GTCGAAGGTTGAGAACCAGGAAGGAGTGCTGAA-TTTCGATGAGATCTTGCGTGAAACTG 792
||| |||||||||||||||||||| ||| | || ||| |||||||||||||||||||| |
Sbjct 859 GTCAAAGGTTGAGAACCAGGAAGGTGTGATTAACTTT-GATGAGATCTTGCGTGAAACAG 917
Query 793 ATGCATTCATGGTTGCCCGTGGTGATCTCGGGATGGAGATTCCGATAGAGAAGATTTTCT 852
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 918 ATGCGTTCATGGTTGCCCGTGGTGATCTCGGGATGGAGATTCCGATAGAGAAGATCTTCT 977
Query 853 TGGCTCAAAAGATGATGATCTACAAGTGTAACCTTGCGGGTAAACCAGTGGTCACAGCCA 912
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 978 TGGCTCAAAAGTTGATGATCTACAAGTGTAACCTTGCGGGTAAACCGGTGGTCACAGCCA 1037
Query 913 CTCAAATGCTCGAGTCTATGATCAAATCACCACGGCCAACACGAGCTGAAGCCACAGATG 972
|||| ||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1038 CTCAGATGCTGGAGTCAATGATCAAATCACCTCGGCCAACCCGAGCTGAAGCCACAGATG 1097
Query 973 TAGCAAACGCAGTTCTCGATGGCACTGACTGTGTGATGCTCAGCGGAGAAAGTGCTGCAG 1032
| ||||| || ||||| ||||| ||||||||||||||||| ||||| || ||||| ||||
Sbjct 1098 TTGCAAATGCTGTTCTTGATGGTACTGACTGTGTGATGCTTAGCGGTGAGAGTGCAGCAG 1157
Query 1033 GAGCTTACCCGGAAATAGCAGTGAAAA-CAATGGCTAAAATCTGCATCGAGGCGGAATCA 1091
||||||| ||||||||||| |||||| || ||||||| |||||||| || || |||||
Sbjct 1158 GAGCTTATCCGGAAATAGCTGTGAAAGTCA-TGGCTAAGATCTGCATTGAAGCCGAATCC 1216
Query 1092 TCGCTTGACTACAACACAATCTTCAAGGAAATGATTAGAGCAACTCCGCTTCCAATGAGC 1151
|||||||| |||||||||||||| || || ||||| |||||||||| ||||||||||||
Sbjct 1217 TCGCTTGATTACAACACAATCTTTAAAGAGATGATCCGAGCAACTCCACTTCCAATGAGC 1276
Query 1152 ACACTTGAGAGTCTTGCATCATCAGCTGTACGAACTGCAAACAAAGCCAAAGCCAAACTC 1211
|||| ||||||||||||||||| |||||||| ||||| |||||||| | || ||||||
Sbjct 1277 CCACTCGAGAGTCTTGCATCATCCGCTGTACGGACTGCTAACAAAGCGAGGGCAAAACTC 1336
Query 1212 ATCATCGTGTTGACCCGAGGAGGTACAACAGCTAAACTGGTGGCTAAGTATAGACCGGCT 1271
||||| |||||||| || |||||| |||| ||||| || |||||||| || |||||||||
Sbjct 1337 ATCATTGTGTTGACACGTGGAGGTTCAACTGCTAATCTCGTGGCTAAATACAGACCGGCT 1396
Query 1272 GTTCCAATTCTATCGGTGGTTGTTCCGGTCT-TCACCAGC-GATACCTTTAACTGGAGTT 1329
||||| ||||| || |||||||| ||||| | | |||| | ||| ||||| ||||| ||
Sbjct 1397 GTTCCGATTCTGTCAGTGGTTGTCCCGGT-TATGACCA-CTGATTCCTTTGACTGGTCTT 1454
Query 1330 GCAGCGATGAGTCACCGGCAAGGCATAGTTTGATATATAGAGGTCTGATTCCGGTTTTGG 1389
| || || |||||||| |||||||||||| ||||||| |||||||| || || | ||||
Sbjct 1455 GTAGTGACGAGTCACCTGCAAGGCATAGTCTGATATACAGAGGTCTAATCCCTATGTTGG 1514
Query 1390 GTGAAGGATCTGCAAAAGCAACTGATAGTGAATCTACAGAAGAGATTATTGA-GTCTGCT 1448
||||||||||||||| ||||| ||||||||| | || |||| || ||||| | |||||
Sbjct 1515 CTGAAGGATCTGCAAAGGCAACAGATAGTGAAGCCACCGAAGTTATCATTGAAG-CTGCT 1573
Query 1449 TTGAAGTCAGCGACAGAGAAAGGACTGTGTAACCATGGTGATGCTGTGGTGGCTCTGCAC 1508
||||||| || || ||| ||||||||| |||| ||||||||| | ||||| ||||||
Sbjct 1574 CTGAAGTCGGCTACTCAGAGAGGACTGTGCAACCGTGGTGATGCAATCGTGGCGCTGCAC 1633
Query 1509 CGTATTGGAGCTGCTTCGGTTATCAAGATCTGTGTGGTGAAGTGA 1553
|||||||||||||| || ||||| |||||||||||||| ||||||
Sbjct 1634 CGTATTGGAGCTGCCTCAGTTATTAAGATCTGTGTGGTTAAGTGA 1678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77660243115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5