BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951178

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63690.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   623    5e-178


> AT5G63690.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr5:25492864-25493283 REVERSE LENGTH=420
Length=420

 Score =  623 bits (337),  Expect = 5e-178
 Identities = 393/420 (94%), Gaps = 3/420 (1%)
 Strand=Plus/Plus

Query  22   ATGCAGTTGTTTCTCAAGGACATAGTTCCCGCAGCGCAGAACAACATAAACACACGTTTC  81
            ||||| |||||||||||||| |||||||| || ||||||||||||||| |||| ||||||
Sbjct  1    ATGCAATTGTTTCTCAAGGATATAGTTCCAGCGGCGCAGAACAACATAGACACGCGTTTC  60

Query  82   ATCATACTAGACAAAGCCAAATCGCCGGCGGCAAACGGGAAG-A--ATTGTATCGCGTTG  138
            ||||| || ||||||||||||||| | ||||||||||||||| |  ||||||| ||||||
Sbjct  61   ATCATCCTCGACAAAGCCAAATCGTCTGCGGCAAACGGGAAGAATTATTGTATTGCGTTG  120

Query  139  GCGGCGGATGAAACGGCTGCGGTTCACATACAGCTGTGGGGAGATGAGTGTGATGCTTTC  198
            |||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct  121  GCGGCGGATGAAACGGCTGCGGTTCACATACAGCTGTGGGGAGATGAGTGCGACGCGTTC  180

Query  199  GAGGCGGGAGATATCGTGAAGCTCACCAATGGGATATTCTCATACGTGCGGAATAGTGGA  258
            ||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct  181  GAGGCAGGAGATATCGTGAAGCTCACCAATGGGATTTTCTCATACGTGCGTAACAGTGGA  240

Query  259  CTTATTCTCAGAGCTGGAAAACGTGGGAGGATGGAGAAGATGGGAGAGTTCACGGTTGCG  318
            ||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct  241  CTTATTCTCAGAGCTGGGAAGCGTGGGAAGATGGAGAAGATGGGAGAGTTCACGGTTGCG  300

Query  319  TTTGTGGAAACGCCAAACATTAGTGAGATCCAATGGAATCCTGATCCTGAGAATCCCAAA  378
            ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  301  TTTGTCGAAACGCCAAACATTAGTGAGATCCAATGGATTCCTGATCCTGAGAATCCCAAA  360

Query  379  CGCTATATTCAGAGCGGCGTCGTTTCTGCTTATTCCCGTATCTTCCCTCCTTTGCCTTGA  438
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  361  CGCTATATTCAGAGCGGCGTCGTTTCAGCTTATTCCCGTATCTTCCCTCCTTTGCCTTGA  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21816203066


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5