BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951190
Length=2267
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63810.1 | Symbols: BGAL10 | beta-galactosidase 10 | chr5:25... 3633 0.0
> AT5G63810.1 | Symbols: BGAL10 | beta-galactosidase 10 | chr5:25537074-25541529
FORWARD LENGTH=2608
Length=2608
Score = 3633 bits (1967), Expect = 0.0
Identities = 2177/2278 (96%), Gaps = 15/2278 (1%)
Strand=Plus/Plus
Query 1 CGACGAAGAAGAGCTAAC-A--ATAATGAATCGGG-T--TACTGAAAGCATTGCGTCTAC 54
|||||||||||||||||| | ||||||||||||| | |||||||||||||||||||||
Sbjct 144 CGACGAAGAAGAGCTAACAACGATAATGAATCGGGTTACTACTGAAAGCATTGCGTCTAC 203
Query 55 GGCGATTCTGCTGGCGATGGTGTTTCTCTTGTCGTGGAGATCTATCGACGCCGCGAATGT 114
|||||| ||| ||| ||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 204 GGCGATACTGGTGGTGATGGTGTTTCTCTTCTCGTGGAGATCTATCGAGGCGGCGAATGT 263
Query 115 ATCCTACGACCACCGTTCTCTCACCATCGGCAATCGCCGTCAGCTCATTATCTCCGCCGC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 ATCCTACGACCACCGTTCTCTCACCATCGGCAATCGCCGTCAGCTCATTATCTCCGCCGC 323
Query 175 CATTCACTATCCCAGAAGCGTTCCAGCTATGTGGCCATCACTTGTTCAAACAGCAAAAGA 234
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 324 CATTCACTATCCCAGAAGCGTCCCTGCTATGTGGCCATCTCTTGTTCAAACAGCAAAAGA 383
Query 235 AGGAGGCTGCAACGCAATTGAGTCTTATGTGTTTTGGAATGGCCATGAGCCATCTCCTGG 294
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 384 AGGAGGCTGCAACGCAATCGAGTCTTATGTCTTCTGGAATGGCCATGAGCCATCTCCTGG 443
Query 295 AAAGTATTATTTTGGTGGCCGGTATAATATAGTGAAGTTCATCAAGATTGTTCAGCAAGC 354
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 444 AAAGTATTATTTTGGTGGCCGGTATAATATAGTGAAGTTTATCAAGATTGTTCAACAAGC 503
Query 355 TGGAATGCATATGATTCTACGAATTGGTCCTTTTGTTGCGGCCGAGTGGAATTTCGGGGG 414
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 504 TGGAATGCATATGATTCTACGAATTGGTCCTTTTGTTGCCGCCGAGTGGAATTACGGGGG 563
Query 415 AGTCCCGGTTTGGCTGCATTACGTGCCAGGAACAGTCTTCAGGGCGGATAATGAGCCATG 474
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 564 AGTCCCGGTTTGGCTGCATTACGTGCCAGGAACAGTCTTCAGAGCGGATAATGAGCCATG 623
Query 475 GAAGCATTACATGGAGAGTTTCACGACGTATATAGTAAACCTGTTGAAAAAAGAGAAGCT 534
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 624 GAAGCATTACATGGAGAGTTTCACGACGTATATAGTAAACCTGTTGAAACAAGAGAAGCT 683
Query 535 TTTCGCACCACAGGGCGGTCCAATTATCTTGTCTCAGGTGGAAAACGAGTACGGGTATTA 594
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 684 TTTTGCACCTCAGGGCGGTCCAATAATCTTGTCTCAGGTGGAAAACGAGTACGGGTATTA 743
Query 595 TGAAAAGGATTACGGAGAAGGAGGGAAAAGGTATGCTCAATGGTCTGCTTCTATGGCTGT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 TGAAAAGGATTACGGAGAAGGAGGGAAAAGGTATGCTCAATGGTCTGCTTCTATGGCTGT 803
Query 655 TTCACAGAACATTGGTGTTCCATGGATGATGTGCCAGCAATGGGATGCCCCTCCGACTGT 714
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 804 TTCACAGAATATTGGTGTTCCATGGATGATGTGCCAGCAATGGGATGCTCCTCCCACTGT 863
Query 715 GATTAGTACCTGCAATGGCTTTTACTGTGACCAGTTCACACCTAATACACTAGATAAACC 774
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 864 GATTAGTACCTGCAATGGCTTTTACTGTGACCAATTCACACCTAATACACCAGATAAACC 923
Query 775 CAAGATTTGGACTGAGAACTGGCCTGGATGGTTTAAAACGTTTGGAGGCAGAGACCCTCA 834
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 924 CAAGATTTGGACTGAGAACTGGCCTGGATGGTTTAAAACTTTTGGAGGCAGAGACCCTCA 983
Query 835 CAGACCAGCAGAGGATGTAGCTTACTCTGTTGCTCGATTTTTCGGGAAAGGTGGAAGTGT 894
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 984 CAGACCAGCAGAGGATGTAGCCTACTCTGTTGCTCGGTTTTTCGGGAAAGGTGGAAGTGT 1043
Query 895 TCACAATTACTACATGTATCATGGAGGAACGAATTTTGGACGTACTTCAGGAGGACCTTT 954
|||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1044 TCACAACTACTACATGTATCACGGAGGAACTAATTTTGGACGTACTTCAGGAGGACCTTT 1103
Query 955 TATCACTACAAGTTATGACTATGAAGCTCCGATCGATGAGTATGGATTGCCTAGATTACC 1014
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1104 TATCACTACAAGCTATGACTATGAAGCTCCCATCGATGAGTATGGATTGCCTAGATTACC 1163
Query 1015 AAAATGGGGACACCTTAAGGATCTCCACAAAGCTATAATGCTCTCTGAAAACTTGCTGAT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 AAAATGGGGACACCTTAAGGATCTCCACAAAGCTATAATGCTCTCTGAAAACTTGCTGAT 1223
Query 1075 CAA-TGGCGAGCATCAAAATTTTACATTAGGCCATTCACTCGAGGCTGATGTGTACACAG 1133
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 -AAGTGGCGAGCATCAAAATTTTACATTAGGCCATTCACTCGAGGCTGATGTGTACACAG 1282
Query 1134 ACTCTTCGGGAACTTGTGCTGCGTTTCTGTCAAACTTGGATGATAAAAATGACAAGACGG 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1283 ACTCTTCGGGAACTTGTGCTGCGTTTCTGTCAAACTTGGATGATAAAAATGACAAGGCGG 1342
Query 1194 TGATGTTTCGAAACACGTCATACCACTTGCCTGCTTGGTCAGTTAGCATTCTACCTGACT 1253
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 TGATGTTTCGAAACACATCATACCACTTGCCTGCTTGGTCAGTTAGCATTCTACCTGACT 1402
Query 1254 GCAAGAACGAGGTTTTCAACACAGCAAAGGTAACTTCGAAGTCCTCCAAGGTTGAAATGT 1313
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 GCAAGACCGAGGTTTTCAACACAGCAAAGGTAACTTCGAAGTCCTCCAAGGTTGAAATGC 1462
Query 1314 TACCTGGAGATTTGAGATCTTCATCAGGTCTTAAATGGGAAGTGTTCTCCGAGAAACCGG 1373
|||||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1463 TACCTGAAGATTTGAAATCTTCATCAGGTCTTAAATGGGAAGTATTCTCGGAGAAACCGG 1522
Query 1374 GTATTTGGGGAGAAGCAGACATTGTGAAAAACGAACTTGTCGATCATATCAACACCACAA 1433
|||||||||| | |||||| |||||||||| |||||||| || || |||||||||||||
Sbjct 1523 GTATTTGGGGCGCAGCAGATTTTGTGAAAAATGAACTTGTTGACCACATCAACACCACAA 1582
Query 1434 AGGACACAACTGACTATCTTTGGTACACAACAAGTATAATAGTCAGTGCTAATGAAGAGT 1493
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||
Sbjct 1583 AGGACACAACTGACTATCTTTGGTACACAACAAGTATAACAGTCAGTGAAAATGAAGCGT 1642
Query 1494 TCCTAAAGAAAGGAAG-TCCTCCTGTTCTGTTTATTGAATCAAA-GGGACATACTCTTCA 1551
|| | ||||||||||| ||| || |||||||||||||||||||| ||| |||||||||||
Sbjct 1643 TCTTGAAGAAAGGAAGCTCC-CCGGTTCTGTTTATTGAATCAAAAGGG-CATACTCTTCA 1700
Query 1552 TGTTTTCATCAACAAAGAGTACTTAGGAACTGCGACAGGGAATGGGACTCATGTGCCTTT 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 TGTTTTCATCAACAAAGAGTACTTAGGAACTGCGACAGGGAATGGGACTCATGTGCCTTT 1760
Query 1612 CAAACTCAAGAAATCAGTTGCTCTCAAGGCGGGCGAAAACAATATTGATTTGCTTAGCAT 1671
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1761 CAAACTCAAGAAACCAGTTGCTCTCAAAGCGGGCGAAAACAATATTGATTTGCTTAGCAT 1820
Query 1672 GACTGTTGGTCTTTCGAATGCAGGATCCTTTTACGAATGGGTTGGAGCTGGACTTACAAG 1731
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 GACTGTTGGTCTAGCGAATGCAGGATCCTTTTACGAATGGGTTGGAGCTGGACTTACAAG 1880
Query 1732 CGTCTCATTTAAAGGTTTCAACAAGGGCACATTGAATTTGACAAACAGCAAATGGTCCTA 1791
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 CGTCTCAATCAAAGGTTTCAACAAGGGCACATTGAATTTGACAAACAGCAAATGGTCCTA 1940
Query 1792 CAAGCTAGGCGTGCAAGGAGAGCATCTAGAACTGTTCAAGCCAGGTAACTCAGGGGCTGT 1851
|||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1941 CAAGCTCGGCGTGGAAGGAGAGCATCTAGAACTGTTCAAGCCAGGTAACTCCGGGGCTGT 2000
Query 1852 GAAATGGACGGTGACTACGAAACCTCCAAAGAAACAGCCTTTGACTTGGTATAAGGTTGT 1911
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 2001 GAAATGGACGGTGACTACGAAACCTCCCAAGAAACAGCCTCTGACTTGGTATAAGGTTGT 2060
Query 1912 GGTAGACCCACCTTCTGGGAGTGAGCCGGTTGGGCTTGATATGATCAGTATGGGAAAAGG 1971
| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2061 GATAGAGCCACCTTCTGGGAGTGAGCCGGTTGGGCTTGATATGATCAGTATGGGGAAAGG 2120
Query 1972 CATGGCATGGTTAAACGGGGAAGAGATAGGAAGATATTGGCCCAGGATAGCAAGAAAGAG 2031
|||||||||||||| || ||||||||||||||||||||||||||||| || |||||||
Sbjct 2121 AATGGCATGGTTAAATGGTGAAGAGATAGGAAGATATTGGCCCAGGATTGCTAGAAAGAA 2180
Query 2032 CACCCCGAATGATGAATGCGTAAAAGAATGCGATTACAGAGGCAAATTCATGCCGGATAA 2091
|| |||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2181 CAGCCCGAACGACGAGTGCGTAAAAGAATGCGATTACAGAGGCAAATTCATGCCGGATAA 2240
Query 2092 ATGCCTAACTGGATGTGGAGAGCCATCTCAGAGATGGTATCATGTTCCAAGATCATGGTT 2151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2241 ATGCCTAACTGGATGTGGAGAGCCATCTCAGAGATGGTATCATGTTCCAAGATCATGGTT 2300
Query 2152 CAAGTCTTCCGGGAATGAGCTGGTGATCTTCGAGGAGAAAGGAGGCGATCCCATGAAGAT 2211
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 2301 TAAGTCTTCCGGGAATGAGCTGGTGATCTTCGAGGAGAAAGGCGGCAATCCCATGAAGAT 2360
Query 2212 AAAGTTATCCAAAAGGAAAGTTTCGGTGGTGTAAGCAA--AGAACAAGTTAAAAGATG 2267
|||||| |||||||||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct 2361 AAAGTTGTCCAAAAGGAAAGTATCGGTGGTGTAAGCAAGTAGAACAAGTTAAA-GATG 2417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112499421345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5