BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951192

Length=739
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63820.1 | Symbols:  | Protein of unknown function (DUF626) ...   226    3e-58


> AT5G63820.1 | Symbols:  | Protein of unknown function (DUF626) 
| chr5:25541576-25542893 FORWARD LENGTH=678
Length=678

 Score =  226 bits (122),  Expect = 3e-58
 Identities = 183/213 (86%), Gaps = 2/213 (1%)
 Strand=Plus/Plus

Query  263  CTGGAGGATCTTTGCCTGCAGACCCACATGCAACAAGCCTGTGGATGATTATTGGGACCG  322
            ||||||| |||| ||||||||||| |||||   |||| ||||| |||| ||||  |||||
Sbjct  360  CTGGAGGGTCTTGGCCTGCAGACCAACATGTGGCAAGTCTGTGAATGAATATTTTGACCG  419

Query  323  GGATGAAGAAATAGATCCCTTCTACACAGGTGAAATGCCCAAATGGTTGTCTGATGAGGC  382
            | |||| | ||| |||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct  420  GCATGAGGCAATGGATCCCTTCTACACAGGTAAAATGCCCAAATGGTTGTCTGATGACGC  479

Query  383  CTTGACCAGTGACAATAAAAAGTATTACGTGGTGCAAGAATCAGAGCT-GCATGAGAATG  441
            |||| ||  |||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct  480  CTTGGCCTTTGACAACAAAAAGTATTACGTGGTGCAAGAATCAGA-CTTGCATGAGAATG  538

Query  442  AATGGCTGCATCTATTCATCGAGATCGCATTCT  474
            | ||||||| | ||||||| || || | |||||
Sbjct  539  ACTGGCTGCTTGTATTCATGGAAATGGTATTCT  571


 Score =  106 bits (57),  Expect = 3e-22
 Identities = 65/69 (94%), Gaps = 0/69 (0%)
 Strand=Plus/Plus

Query  637  GTGATCACAAAGCTATCATAAGGAAAACCATGGATGGGATAACAGAACATATGAGTCTTG  696
            |||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct  599  GTGATCACAAAGCTATCATAAGGAAAACCATGGATGGGGTACCAGAACACATGAGTCTTG  658

Query  697  AAGTTGCTT  705
            || ||||||
Sbjct  659  AAATTGCTT  667



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35867180958


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5