BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951196
Length=2808
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63840.1 | Symbols: RSW3, PSL5 | Glycosyl hydrolases family ... 4671 0.0
> AT5G63840.1 | Symbols: RSW3, PSL5 | Glycosyl hydrolases family
31 protein | chr5:25545056-25549199 FORWARD LENGTH=3043
Length=3043
Score = 4671 bits (2529), Expect = 0.0
Identities = 2692/2773 (97%), Gaps = 2/2773 (0%)
Strand=Plus/Plus
Query 23 ATGAGATCTCTTCTCTTTGTACTATCACTCATTTGCTTCTGCTCACAAACAGCACTTTCA 82
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1 ATGAGATCTCTTCTCTTTGTACTATCACTCATTTGCTTTTGCTCTCAAACAGCACTTTCA 60
Query 83 TGGAAGAAGGAAGAGTTTCGCAGCTGTGAACAAACTCCATTTTGTAAACGCGCTCGATCT 142
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TGGAAGAAGGAAGAGTTTCGCAGCTGTGACCAAACTCCATTTTGTAAACGCGCTCGATCT 120
Query 143 CGTACTCCCGGCGCGTGTTCTCTGATTGTCGGCGATGTTTCCATCACTGATGGAGATCTC 202
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTACTCCCGGCGCGTGTTCTCTAATTGTCGGCGATGTTTCCATCACTGATGGAGATCTC 180
Query 203 GTAGCGAAGCTTCTACCGAAAACGCCTAATCATGGCGACGGGGATCAGATCAAGCCGTTG 262
||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||
Sbjct 181 GTAGCGAAGCTTCTACCGAAAGCGCCTAATCAAGGCGATGGGGATCAGATCAAGCCGTTG 240
Query 263 ATTCTATCTCTCTCGGTTTACAAGGATGGGATCGTGCGGCTCAAAATCGATGAGGACCAT 322
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ATTCTTTCTCTCTCAGTTTACAAGGATGGGATCGTGCGGCTTAAAATCGATGAGGACCAT 300
Query 323 TCGTTGAACCCGCCGAAGAAGAGGTTTCAAGTTCCTGATGTGGTAGTGTCTGAGTTCGAG 382
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 301 TCGTTGAACCCGCCGAAGAAGAGGTTCCAAGTTCCTGATGTGGTAGTGTCTGAGTTTGAG 360
Query 383 GAGAAGAAGATCTGGCTGCAGAAAGTAGCGACGGAGACGATCTCTGGAGACACTAGTCCG 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGAAGAAGATCTGGCTGCAGAAAGTAGCGACGGAGACGATCTCTGGAGACACTAGTCCG 420
Query 443 TCTTCAGTAGTTTATGTATCCGATGGCTACGAGGCAGTGGTGCGGCACGATCCGTTTGAA 502
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 421 TCTTCAGTAGTTTATGTATCCGATGGTTACGAGGCGGTGGTGCGACACGATCCGTTTGAG 480
Query 503 GTGTATGTGCGTGAGAAATCAGGTGATCGCCGTCGCGTTGTGTCATTGAATTCTCATGGA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTGTATGTGCGTGAGAAATCAGGTGATCGCCGTCGCGTTGTGTCATTGAATTCTCATGGA 540
Query 563 CTATTTGATTTTGAGCAGTTGGGGAGGAAAACTGAAGGAGATAACTGGGAAGAGAAATTT 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTATTTGATTTTGAGCAGTTGGGGAGGAAAACTGAAGGAGATAACTGGGAAGAGAAATTT 600
Query 623 AGGACTCATACGGATTCTAGACCATCTGGTCCTCAATCCATTAGCTTCGATGTTTCATTT 682
||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 601 AGGACTCATACAGATTCTAGACCATCTGGTCCTCAATCTATTAGTTTCGATGTTTCGTTT 660
Query 683 TATGATTCCAGTTTCGTTTATGGAATTCCTGAACACGCCACTAGCTTCGCGTTGAAGCCT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TATGATTCCAGTTTCGTTTATGGAATTCCTGAACACGCCACTAGCTTCGCGTTGAAGCCT 720
Query 743 ACCAAGGGTCCTGGAGTTGAGGAATCTGAACCCTACAGGCTGTTTAATCTAGATGTTTTT 802
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 721 ACCAAGGGTCCTGGAGTTGAGGAATCTGAACCCTACAGGCTTTTTAATCTAGATGTGTTT 780
Query 803 GAATACGATCATGAATCACCATTTGGGCTTTACGGGTCGATTCCATTCATGGTTTCACAT 862
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 781 GAATACGATCATGAATCACCGTTTGGGCTTTACGGGTCGATTCCGTTCATGGTTTCGCAT 840
Query 863 GGGAAATCTGCTAAAACTTCAGGTTTTTTCTGGTTGAATGCTGCGGAAATGCAGATTGAT 922
||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 GGGAAGTCTGGTAAAACTTCAGGATTTTTCTGGTTGAATGCTGCGGAAATGCAGATTGAT 900
Query 923 GTGTTGGCTAATGGATGGGATGCAGAGAGTGGTATTTCTTTGCCTTCTAGTCAGAGTAGG 982
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 GTGTTGGCTAATGGTTGGGATGCAGAGAGTGGTATTTCTTTGCCTTCTAGTCACAGTAGG 960
Query 983 ATCGACACATTCTGGATGAGCGAGGCAGGGATCGTGGATACATTCTTTTTCGTCGGGCCA 1042
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 961 ATCGACACATTCTGGATGAGCGAGGCAGGGATTGTGGATACATTCTTTTTCGTTGGGCCT 1020
Query 1043 GAGCCAAAGGATGTTGTGAAA-CAGTATGCAAGTGTGACAGGTACTTCGGCCATGCCTCA 1101
||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1021 GAGCCAAAGGATGTTGT-AAAGCAGTATGCAAGTGTGACAGGTACTTCAGCCATGCCTCA 1079
Query 1102 GTTGTTTGCCACTGGTTATCATCAATGTAGGTGGAACTACAAAGATGAGGAGGATGTGGC 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTTGTTTGCCACTGGTTATCATCAATGTAGGTGGAACTACAAAGATGAGGAGGATGTGGC 1139
Query 1162 ACAGGTGGACTCGAAATTCGATGAGCACGATATTCCTTATGATGTTCTCTGGCTTGACAT 1221
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 ACAGGTGGACTCGAAATTCGATGAACACGATATTCCTTATGATGTTCTCTGGCTTGACAT 1199
Query 1222 CGAACATACAGATGGGAAGAGATACTTTACATGGGATAGTGTGTTGTTTCCTCATCCAGA 1281
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGAGCATACAGATGGGAAGAGATACTTTACATGGGATAGTGTGTTGTTTCCTCATCCAGA 1259
Query 1282 GGAGATGCAAAAGAAATTGGCTGCAAAGGGTAGGAAGATGGTGACCATTGTGGATCCTCA 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGAGATGCAAAAGAAATTGGCTGCAAAGGGTAGGAAGATGGTGACCATTGTGGATCCTCA 1319
Query 1342 TATCAAGAGGGATGACTCATACTTCTTACACAAGGAGGCTACTCAGATGGGATACTATGT 1401
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1320 TATCAAGAGGGATGACTCATACTTCTTACACAAAGAGGCTACTCAGATGGGATACTATGT 1379
Query 1402 TAAGGATTCATCTGGAAAAGACTTTGATGGTTGGTGCTGGCCTGGTTCATCATCATACAT 1461
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1380 TAAGGATTCATCTGGAAAAGACTTTGATGGTTGGTGCTGGCCTGGTTCATCATCTTACAT 1439
Query 1462 TGATATGTTGAGCCCAGAGATTAGAAAATGGTGGGGTGGGAGGTTCTCATATAAGAACTA 1521
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1440 TGATATGTTGAGCCCAGAGATTAGAAAATGGTGGGGTGGGAGGTTCTCGTATAAGAACTA 1499
Query 1522 TGTTGGTTCAACTCCATCATTATACACCTGGAATGATATGAATGAGCCTTCCGTATTCAA 1581
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1500 TGTTGGTTCAACTCCATCATTGTACACCTGGAATGACATGAATGAGCCTTCTGTATTCAA 1559
Query 1582 TGGTCCTGAGGTTACTATGCCAAGAGATGCATTACATGTTGGGGGTGTTGAACACAGAGA 1641
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TGGTCCCGAGGTTACTATGCCAAGAGATGCATTACATGTTGGGGGTGTTGAACACAGAGA 1619
Query 1642 AGTTCATAACGCATATGGATATTACTTTCACATGGCGACTTCCGATGGGCTTGTTATGCG 1701
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1620 AGTTCATAACGCATATGGATATTACTTCCACATGGCGACTTCCGATGGACTTGTTATGCG 1679
Query 1702 TGAAGAAGGAAAGGATAGGCCTTTTGTATTGTCAAGAGCAATCTTTCCCGGCACTCAAAG 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TGAAGAAGGAAAGGATAGGCCTTTTGTATTGTCAAGAGCAATCTTTCCCGGCACTCAAAG 1739
Query 1762 ATACGGAGCAATTTGGACTGGAGATAACACAGCCGAATGGGAACACCTTAGAGTCTCCAT 1821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ATACGGAGCAATTTGGACTGGAGATAACACAGCCGAATGGGAACACCTTAGAGTCTCCAT 1799
Query 1822 TCCAATGATATTGACACTTGGTCTTACTGGAATTACATTCTCGGGAGCTGATATTGGTGG 1881
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1800 TCCAATGATATTGACACTTGGTCTTACTGGAATTACATTCTCTGGAGCTGATATTGGTGG 1859
Query 1882 GTTTTTTGGAAATCCTGAACCAGAACTTCTAGTTAGGTGGTATCAAGTGGGTGCTTACTA 1941
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1860 GTTTTTTGGAAATCCTGAACCAGAACTTCTAGTTAGGTGGTACCAAGTGGGTGCTTACTA 1919
Query 1942 TCCATTTTTCAGGGGTCATGCTCATCATGATACCAAAAGACGAGAGCCTTGGTTGTTCGG 2001
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1920 TCCATTTTTCAGGGGTCATGCTCATCACGATACCAAAAGACGAGAGCCTTGGTTGTTTGG 1979
Query 2002 TGAACGGAACACAGAACTCATGAGAGATGCCATTCACACTCGTTACACACTGCTCCCATA 2061
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1980 TGAACGGAACACAGAACTCATGAGAGATGCCATACACACTCGTTACACACTGCTCCCATA 2039
Query 2062 CTTCTACACGTTGTTCAGAGAAGCAAACGTCACGGGTGTTCCTGTTGTACGCCCATTATG 2121
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2040 CTTCTACACGTTGTTCAGAGAAGCAAACGTTACGGGTGTTCCTGTTGTACGCCCATTATG 2099
Query 2122 GATGGAATTCCCGCAAGATGAAGCTACTTTTAGCAACGATGAAGCCTTCATGGTCGGTAA 2181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 GATGGAATTCCCGCAAGATGAAGCTACTTTTAGCAACGATGAAGCCTTCATGGTCGGTAG 2159
Query 2182 TGGTCTACTAGTTCAAGGAGTTTACACTAAGGGAACAACACAAGCTTCAGTGTATTTGCC 2241
||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 2160 TGGTCTACTGGTTCAAGGAGTTTACACCAAGGGAACAACGCAAGCTTCCGTGTATTTGCC 2219
Query 2242 TGGCAAAGAATCATGGTATGACCTGAGAAACGGTAAGACTTATGTTGGAGGCAAGACTCA 2301
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 2220 TGGCAAAGAATCATGGTATGACTTGAGAAACGGTAAGACTTACGTTGGAGGCAAGACTCA 2279
Query 2302 CAAGATGGACGCTCCAGAGGAGAGTATTCCTGCATTTCAGAAGGCAGGAACCATCATCCC 2361
||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2280 CAAGATGGATGCTCCAGAGGAGAGTATTCCTGCGTTTCAAAAGGCAGGAACCATCATCCC 2339
Query 2362 AAGGAAGGACCGGTTTAGGCGAAGTTCCTCTCAAATGGACAATGATCCTTATACTTTGGT 2421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2340 AAGGAAGGACCGGTTTAGGCGAAGTTCCTCTCAAATGGACAATGATCCTTATACTTTGGT 2399
Query 2422 GGTAGCTTTGAACAGTTCTCAAGAAGCAGAAGGTGAACTTTACATCGACGACGGCAAAAG 2481
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2400 GGTAGCTTTGAACAGTTCTCAAGAAGCAGAAGGTGAACTCTACATCGATGACGGCAAAAG 2459
Query 2482 CTTTGAATTCAGGCGAGGCTCTTACATCCATCGCCGCTTCGTCTTCTCGAATGGTGTTCT 2541
|||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 2460 CTTTGAATTCAGACGAGGCTCTTACATCCATCGTCGCTTCGTCTTCTCAAAGGGTGTTCT 2519
Query 2542 TACATCAACGAACTTAGCTCCTCCACAAGCTCGTCTCTCTTCCCAATGCTTGATAGACAG 2601
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 2520 TACATCAACGAACTTAGCTCCTCCAGAAGCTCGTCTCTCTTCCCAATGCTTGATCGACAG 2579
Query 2602 AATAATCCTCTTGGGACACAGCTCAGGACCGAAATCTGCATTGGTCGAACCGTTGAATCA 2661
||| ||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct 2580 AATTATCCTCTTGGGACACAGCTCAGGTCCAAAATCTGCGTTGGTGGAACCGTTGAATCA 2639
Query 2662 AAAGGCAGAGATCGAGATGGGACCGCTGCGAATGGGTGGGCTTGTAGCTTCTTCGGGTAC 2721
|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2640 AAAGGCAGAGATTGAGATGGGACCTCTGCGAATGGGTGGGCTTGTAGCTTCCTCGGGTAC 2699
Query 2722 AAAGGTGTTGACTATCCGCAAACCGGGTGTTCGAGTGGACCAAGACTGGACCGTAAAGAT 2781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2700 AAAGGTGTTGACTATCCGCAAACCGGGTGTTCGAGTGGACCAAGACTGGACCGTAAAGAT 2759
Query 2782 TCTGTGATTGAAC 2794
|||||||||||||
Sbjct 2760 TCTGTGATTGAAC 2772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139514268483
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5