BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951204

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63905.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   444    2e-124


> AT5G63905.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; EXPRESSED 
IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr5:25570858-25571586 REVERSE LENGTH=511
Length=511

 Score =  444 bits (240),  Expect = 2e-124
 Identities = 252/258 (98%), Gaps = 0/258 (0%)
 Strand=Plus/Plus

Query  1    TCAAATCAATCCGATCGGAGATGGGTTGTTTCAGTTGCTTCGACGGAACCCAAAAGGAAC  60
            ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  64   TCAAATCAATCTGATCGTAGATGGGTTGTTTCAGTTGCTTCGACGGAACCCAAAAGGAAC  123

Query  61   AGCGTAAGGAAGAAGAGAGACAAGCCTCCGCCGAAGCTCGCGCCAGAGCCGCCGAAGCTG  120
            |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct  124  AGCGTAAGGAAGAAGAGAGACAAGCCTCCGCCGAAGCTCGTGCCAAAGCCGCCGAAGCTG  183

Query  121  CCCAGCGACGGAAAGAGCAGTTTGATAAGTCTGCAGCTGGAAGAGCTGCACAAGCTCAAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  184  CCCAGCGACGGAAAGAGCAGTTTGATAAGTCTGCAGCTGGAAGAGCTGCACAAGCTCAAT  243

Query  181  TACAGCAAATGGCTAAACAATCTGCAAATACTAACAAAGGAGAGCCTGTTCTTAAGTGGC  240
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  244  TACAACAAATGGCTAAACAATCTGCAAATACTAACAAAGGAGAGCCTGTTCTTAAGTGGC  303

Query  241  AGATGACGTAGTGATGAG  258
            | ||||||||||||||||
Sbjct  304  AAATGACGTAGTGATGAG  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12516669501


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5