BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951227
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64100.1 | Symbols: | Peroxidase superfamily protein | chr5... 1611 0.0
> AT5G64100.1 | Symbols: | Peroxidase superfamily protein | chr5:25650641-25652123
REVERSE LENGTH=1240
Length=1240
Score = 1611 bits (872), Expect = 0.0
Identities = 985/1040 (95%), Gaps = 6/1040 (1%)
Strand=Plus/Plus
Query 5 TTATTTATTAAAAAGAAAAATGAGTCGTGGTTATAATTTGCTATTCGTTCTAGTCACGTT 64
||| ||| |||||||||||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 43 TTAATTACTAAAAAGAAAAATGGGTCGTGGTTACAATTTGCTATTCGTTCTAGTAACGTT 102
Query 65 TTTAGTATTGGTTGCAGCTGTAACCGCACAAGGGAACCGTGGCTCAAACAACGGTGGTGG 124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 103 TTTAGTATTGGTTGCAGCTGTAACCGCACAAGGGAACCGTGGCTCAAACAGCGGTGGTGG 162
Query 125 TCGAAGACCACGAT-TTGGGTTTTATGGGAATAGATGCCGAAACGTAGAGTCTATTGTGA 183
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 TCGAAGACCAC-ATGTTGGGTTTTATGGGAATAGATGCCGAAACGTAGAGTCTATTGTGA 221
Query 184 AATCTGTGGTTGAGTCTCATGTCCGGTCTATCCCGGCTAATGCACCTGGAATCTTGCGTA 243
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 222 GATCTGTAGTTCAGTCTCATGTCCGGTCTATCCCGGCTAATGCACCTGGAATTTTGCGAA 281
Query 244 TGCATTTCCACGATTGCTTTGTCCGTGGCTGTGATGGCTCGGTTCTCCTCGCTGGTAACA 303
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 282 TGCATTTCCACGATTGCTTTGTCCATGGCTGCGATGGCTCGGTTCTCCTCGCTGGTAACA 341
Query 304 CCTCAGAGAGAACCGCAGTTCCAAACCGTTCACTGAGAGGTTTCGAAGTTATTGAAGAGG 363
|||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| |
Sbjct 342 CCTCAGAGAGAACCGCAGTTCCGAACCGTTCATTGAGAGGGTTCGAAGTTATTGAAGAAG 401
Query 364 CTAAGGCTCGGCTTGAGAAGGCTTGTCCTCGAACCGTTTCTTGTGCTGATATTCTCACCC 423
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 402 CTAAGGCTCGGCTTGAGAAGGCTTGTCCTCGTACCGTTTCTTGTGCTGATATTCTCACCC 461
Query 424 TTGCTGCTCGAGACGCTGTCGTTTTGACCGGTGGACAACGCTGGGAAGTGCCATTGGGAC 483
|||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 462 TTGCAGCCCGAGACGCCGTCGTTTTGACCGGTGGACAACGCTGGGAAGTGCCCTTGGGAC 521
Query 484 GTCTCGACGGCCGAATCTCGCAAGCCTCAGACGTGAACTTGCCCGGACCAAGCGACTCAG 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 522 GTCTCGACGGCCGAATCTCGCAAGCCTCAGACGTGAACTTGCCCGGACCAAGCGACTCCG 581
Query 544 TTGCTAAGCAGAAGCAAGACTTCGCTGCCAAAACTCTTAACACATTAGACCTCGTAACTC 603
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 582 TTGCTAAGCAGAAGCAAGACTTCGCTGCTAAAACTCTCAACACATTAGACCTCGTGACTC 641
Query 604 TTGTTGGCGGACACACAATAGGAACTGCTGGCTGCGGTCTAGTAAGGGGAAGGTTCTTTA 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 642 TTGTTGGCGGACACACAATAGGAACTGCTGGCTGCGGTCTAGTAAGGGGAAGGTTCGTTA 701
Query 664 ACTTCAACGGCACAGGACAACCCGACCCATCAATCGACTCGAGTTTTGTGCCGCTGATTC 723
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 702 ACTTCAACGGCACAGGACAACCTGACCCATCAATCGACCCGAGTTTTGTGCCGCTGATTC 761
Query 724 AGGCTCAGTGCCCTCAAAATGGAGGCACCCGAGTCGAGTTAGACGAGGGAAGTGTTGGTA 783
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 762 TGGCTCAGTGCCCTCAAAATGGAGGCACCCGAGTGGAGTTAGACGAGGGAAGTGTTGACA 821
Query 784 GGTTTGACACATCGTTCCTAAGGAAGGTGACGTCAAGTCGCGTGGTTCTTCAATCCGATC 843
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 822 AGTTTGACACATCGTTCCTAAGGAAGGTGACGTCAAGTCGCGTGGTTCTCCAATCCGATC 881
Query 844 TACTCCTATGGAGGGATCCCGAGACCCGAGTCATCATTGAACGGTTATTAGGTTTACGCC 903
|| ||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 882 TAGTCCTATGGAAGGATCCCGAGACCCGAGCCATCATTGAACGTTTATTAGGATTACGCC 941
Query 904 GACCATCCTTGAGGTTCGGATCCGAGTTCGGGAAGTCGATGGTCAAGATGAGTCTCATAG 963
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 942 GACCATCCTTGAGGTTCGGAACCGAGTTCGGGAAGTCGATGGTCAAAATGAGTCTCATAG 1001
Query 964 AAGTTAAGACTCGATCAGCTGATGGTGAGATTCGTAGGGTTTGCTCTGCGATCAACTAAG 1023
||||||||||| |||||| || || ||||||||| ||||||| || || ||||||||||
Sbjct 1002 AAGTTAAGACTGGATCAGATG--GG-GAGATTCGTCGGGTTTGTTCCGCCATCAACTAAG 1058
Query 1024 AATTAAAAAA-CACAAATGT 1042
| |||||||| |||||||||
Sbjct 1059 ATTTAAAAAAACACAAATGT 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5