BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951228
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64110.1 | Symbols: | Peroxidase superfamily protein | chr5... 1589 0.0
> AT5G64110.1 | Symbols: | Peroxidase superfamily protein | chr5:25654074-25656030
REVERSE LENGTH=1397
Length=1397
Score = 1589 bits (860), Expect = 0.0
Identities = 984/1043 (94%), Gaps = 12/1043 (1%)
Strand=Plus/Plus
Query 1 AAAAACTAAGAAGAAACCAAAATGGGAAGTTCTACTAATTTTAATCCTTGCTACGTTAAC 60
|||||||||||||||||||||||| |||||| ||||||||| |||||||| | | ||
Sbjct 64 AAAAACTAAGAAGAAACCAAAATGAGAAGTTTTACTAATTTAAATCCTTG---C--T-AC 117
Query 61 GTTCTCTTACCGTTTTTCCTTGTCCTAGCCGCGAATGCAACACATAAAAACTTTTTCCTC 120
|||||||||||||| ||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 118 GTTCTCTTACCGTTCTTCCTTGTCCTAGCCACGAATGCAACACATACAAACAATTTCCTC 177
Query 121 CCAAGGCCACGGATC-GGGTATTACGGTAGTGCATGCTGGAATGTAGAATCGATAGTGCG 179
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 CCAAGGCCACGGA-CTGGGTATTACGGTAGTGCATGCTGGAATGTAGAATCGATAGTTCG 236
Query 180 GTCCGTGGTCGAGTCTAACTATCTTGCTAATCCAGCTAATGCTCCGGGCATTTTGCGTAT 239
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 237 GTCCGTGGTTGAGTCTAACTATCTTGCTAATCCAGCCAATGCTCCAGGCATTTTGCGTAT 296
Query 240 GCACTTTCACGATTGTTTCGTCCAAGGCTGTGACGCCTCCGTTCTCCTAGCCGGACCTAA 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCACTTTCACGATTGTTTCGTTCAAGGCTGTGACGCCTCCGTTCTCCTAGCCGGACCTAA 356
Query 300 CTCCGAGAGAACGGCGATTCCGAATCTATCGTTGAGAGGGTTTAATGTCATCGAAGAAGC 359
||| ||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 357 CTCTGAGCGAACGGCGATTCCAAATCTATCGTTGAGAGGGTTTAATGTCATTGAAGAAGC 416
Query 360 TAAGACGCAGCTTGAGATCGCTTGTCCTCGAACTGTCTCTTGTGCTGATATTCTCGCACT 419
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 417 TAAGACTCAGCTTGAGATCGCTTGTCCTCGAACAGTCTCTTGTGCTGATATCCTCGCACT 476
Query 420 CGCTGCACGCGACTTCGT-CAGTTTGGCCGGTGGACCATGGTGGCCAGTTCCATTGGGGC 478
||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 477 CGCTGCACGTGACTTCGTCCA-TTTGGCCGGTGGACCATGGTGGCCAGTTCCATTGGGGA 535
Query 479 GACTCGATGGCCGGGTTTCGCTAGCCTCGAATGTCATTTTGCCGGGACCTACCGACTCCG 538
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GACTCGATGGCCGAATTTCTCTAGCCTCGAATGTCATTTTGCCGGGACCTACCGACTCCG 595
Query 539 TTGCCGTACAGAAGCTGAGGTTCGCCGaaaaaaaTCTTAATACCCAAGATCTCGTTGTCC 598
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 596 TTGCCGTGCAGAAGCTGAGGTTTGCCGAAAAAAATCTTAATACCCAAGATCTCGTTGTCC 655
Query 599 TTGCTGCTGGACACACGATAGGAACGGCCGGGTGTGTTGTGTTTAGGGACAGATTCTTCA 658
||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 656 TTGCTGCTGGACATACGATAGGAACGGCCGGATGTATTGTGTTTAGGGACAGATTCTTCA 715
Query 659 ACTACGACAACACAGGAAGTCCGGACCCAACCATCGCCCCGAGTTTCGTCCCTCAGATCC 718
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 716 ACTACGACAACACAGGAAGTCCGGACCCAACCATCGCCCCGAGTTTTGTCCCTCTGATCC 775
Query 719 AAGCTCAATGTCCTCTGAACGGTGACCCTGCGACTCGTGTAGTGCTGGACACGGGAAGTG 778
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 776 AAGCTCAATGCCCTCTGAATGGTGACCCCGCGACTCGTGTAGTGCTGGACACGGGAAGTG 835
Query 779 GAGACCAATTCGATACGTCGTACCTTAACAACTTGAGGAACGGTCGAGGTCTCCTCGAGT 838
| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 836 GTGACCAATTTGATACGTCGTACCTTAACAACTTGAAGAACGGTCGAGGTCTCCTCGAGT 895
Query 839 CTGATCAGGTCCTATGGACTAACC-CTGAGACCCGACCCATCGTGGAACGGCTTCTAGGA 897
|||||||||||||||||||||| | | ||||||||||||||||||||| |||||||||||
Sbjct 896 CTGATCAGGTCCTATGGACTAATCTC-GAGACCCGACCCATCGTGGAAAGGCTTCTAGGA 954
Query 898 CTACGATTTCCGTTTCTTATTTTCGGACTGGAGTTCGCGAGGTCCATGACCAAGATGAGT 957
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CTACGGTTTCCGTTTCTTATTTTCGGACTGGAGTTCGCGAGGTCCATGACCAAGATGAGT 1014
Query 958 CAGATCGAGGTCAAGACGGGTTTGGACGGGGAGATTCGTAGGGTTTGTTCTGCGGTTAAC 1017
|| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1015 CAAATCGAGATCAAGACGGGTTTGGATGGGGAGATTCGTAGGGTTTGTTCTGCGGTTAAC 1074
Query 1018 TGATTAAAATAAAATTAATTAAC 1040
| ||||| |||| ||||||||||
Sbjct 1075 TAATTAATATAAGATTAATTAAC 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50987659205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5