BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951231
Length=235
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64140.1 | Symbols: RPS28 | ribosomal protein S28 | chr5:256... 357 3e-98
> AT5G64140.1 | Symbols: RPS28 | ribosomal protein S28 | chr5:25667324-25668292
REVERSE LENGTH=480
Length=480
Score = 357 bits (193), Expect = 3e-98
Identities = 213/222 (96%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 17 CAGAATGGATTCTCAGATCAAACACGCCGTGGTCGTTAAGGTCATGGGTAGGACTGGTTC 76
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 77 CAGAATGGATTCTCAAATCAAACACGCCGTGGTCGTGAAGGTCATGGGTAGGACTGGTTC 136
Query 77 TCGTGGTCAGGTCACTCAGGTTAGAGTCAAGTTCACTGATTCAGACCGTTACATCATGAG 136
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 137 TCGTGGTCAGGTCACTCAGGTTAGAGTCAAATTCACTGATTCAGACCGTTTCATCATGAG 196
Query 137 GAACGTGAAAGGACCGGTCAGAGAAGGAGATATCCTCACTCTCCTCGAGTCCGAGAGAGA 196
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 197 GAACGTGAAAGGACCCGTCAGAGAAGGAGATGTCCTCACTCTCCTCGAGTCCGAGAGAGA 256
Query 197 AGCTAGAAGACTCCGTTGATTCCA---TATCCCAATTCTCTT 235
|||||||||||||||||||||||| |||||||||||||||
Sbjct 257 AGCTAGAAGACTCCGTTGATTCCACCATATCCCAATTCTCTT 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10606495039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5