BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951235

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64180.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   843    0.0  


> AT5G64180.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:25677080-25678357 
FORWARD LENGTH=713
Length=713

 Score =  843 bits (456),  Expect = 0.0
 Identities = 500/521 (96%), Gaps = 4/521 (1%)
 Strand=Plus/Plus

Query  1    ATCTTTTGATCTTTTTTCCGATGGAGGAGCAGA-TCGGAGGGAGCGATGAGAGATGGAAA  59
            ||| ||||||| ||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct  65   ATCCTTTGATC-TTTTTCCGATGGAGGAGCA-ATTCGGCGGGAGCGATGAGAGATGGAAA  122

Query  60   GGATCATTGGAGAATATAACGGAGATGGCATCGAATCTCGATTCTCTTCAGAAACTTCTC  119
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  123  GGATCATTGGAGAATATAACGGAGATGGCATCGAATCTCGATTCGCTTCAGAAACTTCTC  182

Query  120  CTCAAGAAAGCAGTCTTCGTCGAAGAAGACACTTTCGCTAGAGCTTCTCTCGTCTCCGAA  179
            |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| 
Sbjct  183  CTCAAGAAAGCAGTCTTCGTTGAAGAAGACACTTTCTCTAGAGCTTCTCTCGTCTCCGAG  242

Query  180  CAAGCCCGAACCATCAAGGTTCTTGAGCAAAGAGTACAAACACTAGAAAGAGAACTAGAT  239
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  CAAGCCCGAACAATCAAGGTTCTTGAGCAAAGAGTACAAACACTAGAAAGAGAACTAGAT  302

Query  240  GCTGCCATTACAGCTGCTGCTCATGCTCGGTCTGAGAAACGACAAGCTGAGTCCTCTCAA  299
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  303  GCTGCCATTACAGCTGCTGCTCATGCTCGGTCTGAGAAACGCCAAGCTGAGTCCTCTCAA  362

Query  300  AAGGCTGCTGAATCACGTGCCCAAGAGGTCACGAAAGAGCTCGAAAACACCACAAAGGTT  359
            |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct  363  AAGGCTGCTGAATCACGTGCCCAAGATGTCACAAAAGAGCTTGAAAACACCACAAAGGTT  422

Query  360  TTCAAGCTACATATGGAAGAGCTCCGGGGAATGCAAGAACAGATATTCAAACGCGATAAC  419
            |||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||||
Sbjct  423  TTCAAGCTGCATATGGAAGAGCTTCGAGGAATGCAAGAACAGATATCCAAACGCGATAAC  482

Query  420  GAGATCAAACTCTTAGAAGCTATAATCCAAACGCTCGGCGGCAAAGAGCGGTTGGGAAAA  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  483  GAGATCAAACTCTTAGAAGCTATAATCCAAACGCTCGGCGGCAAAGAGCGGTTGGGAAAA  542

Query  480  AGTGGCGTGAATGGATGATGATGATGCGtttttttCACTTG  520
            || | ||||||||||||||||||||||||||||| ||||||
Sbjct  543  AGCGACGTGAATGGATGATGATGATGCGTTTTTT-CACTTG  582



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24865902765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5