BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951248
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64250.2 | Symbols: | Aldolase-type TIM barrel family prote... 1744 0.0
> AT5G64250.2 | Symbols: | Aldolase-type TIM barrel family protein
| chr5:25697354-25699212 REVERSE LENGTH=1538
Length=1538
Score = 1744 bits (944), Expect = 0.0
Identities = 1016/1051 (97%), Gaps = 4/1051 (0%)
Strand=Plus/Plus
Query 1 GATTTATAGCAGAGGAAAGTGAAATCATGAAAGGGATTCTAGGGTTTGAACACGGGATAG 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 242 GATTTATAGCAGAGGAAAGTGAAATCATGAAAGGGATTCTAGGGTTTGAATACGGGATAG 301
Query 61 TTCAGGCGCCATTAGGACCAGATATCTCCGGACCAGAGCTTGTAGCCGCAGTCGCTAATG 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 302 TTCAGGCGCCATTAGGACCAGATATCTCCGGACCAGAGCTTGTAGCCGCCGTCGCTAATG 361
Query 121 CCGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGGAGTGTCCTGATTACTTGAGAGAGC 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGGAGTGTCCTGATTACTTGAGAGAGC 421
Query 181 TTATAAGGAAGACAAAGACATTGACAGACAAACCATTTGGGATCGGTGTTGTTCTTGCGT 240
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 422 TTATAAGAAAGACAAAGACATTGACAGAGAAACCATTTGGGATCGGTGTTGTTCTTGCGT 481
Query 241 TTCCTCATGATTTGAACATTAAGGTAATCTTAGAAGAGAAAGTTGCTGTGTTGCAGCTTT 300
||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct 482 TTCCTCATGATTTGAACATTAAGACAATCTTAGAAGAGAAAGTGGCTGTCTTGCAGCTTT 541
Query 301 ATTGGGGTGATTGTTCACAGGAGCTTGTGGATGATGCTCACCGTGCCGGTCTCAAAGTTG 360
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 542 ATTGGGGTGATTGTTCACAGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTA 601
Query 361 TTCCTCAGGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TTCCTCAGGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCA 661
Query 421 TTATTGTCCAAGGGCATGAAGCAGGTGGGCATGTTATTGGCAAGGATGGTCTCTTTTCAT 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TTATTGTCCAAGGGCGTGAAGCAGGTGGGCATGTTATTGGCAAGGATGGTCTCTTTTCAT 721
Query 481 TGTTGCCAAGAGTGGTGGATTTAGTTGGGGAACGCGATATTCCCGTTATCGCTGCCGGAG 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 722 TGTTGCCAAGAGTGGTGGATTTAGTTGGGGAACGCGATATTCCCGTTATTGCTGCTGGAG 781
Query 541 GAATTGTGGATGCACGCGGTTATGTCGCAGCCTTGTCACTTGGTGCTCAAGGGGTCTGTC 600
|||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 782 GAATTGTGGATGGACGCGGTTATGTTGCAGCTTTGTCACTTGGGGCTCAAGGGGTCTGTC 841
Query 601 TAGGCACAAGATTTGTGGCGACTCATGAAAGCTATGCACACCCAATATACAAAAGGAAGT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TAGGCACAAGATTTGTGGCGACTCATGAAAGCTATGCACACCCAATATACAAAAGGAAGT 901
Query 661 TGGTTGAATATGAAAAAACAGAATACACAGATGTGTTTGGAAGAGCAAGGTGGCCTGGTG 720
|| |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 902 TGATTGAATATGAAAAAACCGAATACACGGATGTATTTGGAAGAGCAAGGTGGCCTGGTG 961
Query 721 CGCCTCAACGTGTTCTGGAGACACCTTTCTTTGATGACTGGAGGTCTCTTCCGGCTGGTG 780
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 962 CGCCTCAACGTGTTCTGGAGACGCCTTTCTTTGATGACTGGAGGTCTCTTCCGGCTCATG 1021
Query 781 AGAATGAAGTTAATCAACCTGTTATTGGACGTTCCACCATACATGGCGTTGAAAAGGAGA 840
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AGAATGAAGTTAACCAACCTATTATTGGACGTTCCACCATACATGGCGTTGAAAAGGAGA 1081
Query 841 TAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACGGGCGACTTAGAGAGTATGG 900
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1082 TAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACAGGCGACTTAGAGAGTATGG 1141
Query 901 CTATGTATGCAGGCCAAAGCGTAGGCCTTATCAAGGAGATTTTACCGGCTGGAGAGGTAG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 CTATGTATGCAGGCCAAAGCGTAGGCCTTATCAAGGAGATTTTACCGGCTGGAGAGGTAG 1201
Query 961 TGAAAAGTCTTGTGGAAGAAGCTCAGGCTCTGATCCTCCAAAAGTTCAACAATGCTACTA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TGAAAAGTCTTGTGGAAGAAGCTCAGGCTCTGATCCTCCAAAAGTTCAACAATGCTACTA 1261
Query 1021 C-A--TGATGCAGTGC-AGCCTCAAATCATG 1047
| | ||||||||| | ||||||||||||||
Sbjct 1262 CTACATGATGCAGTCCCAGCCTCAAATCATG 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5