BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951254
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64260.1 | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703929-2... 1461 0.0
AT5G09440.1 | Symbols: EXL4 | EXORDIUM like 4 | chr5:2938347-29... 359 3e-98
> AT5G64260.1 | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703929-25705316
FORWARD LENGTH=1388
Length=1388
Score = 1461 bits (791), Expect = 0.0
Identities = 903/958 (94%), Gaps = 4/958 (0%)
Strand=Plus/Plus
Query 4 TATATCTGCCCTTCTCAATGGCTTTTAATTACCGTTTTGCCATCTTCCTCACTCTCCTCT 63
|||| || |||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 35 TATAACTACCCTTCTCAATGGCTTCTAATTACCGTTTTGCCATCTTCCTCACTCTCTTTT 94
Query 64 TCGCCATCGTC-GGCTTT-TCCGCCGCCGCGTTGGTCGAGGAGCAGCCGCTTGTTCTGAA 121
|||||| || | || ||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 95 TCGCCACCG-CTGG-TTTCTCCGCCGCCGCGTTGGTCGAGGAGCAGCCGCTTGTTATGAA 152
Query 122 ATACCACAACGGAGTTCTCTTGAAAGGTAACATCACCGTTAATCTCATCTGGTACGGGAA 181
|||||||||||||||||| ||||||||||||||||| || |||||| | |||||||||||
Sbjct 153 ATACCACAACGGAGTTCTGTTGAAAGGTAACATCACAGTCAATCTCGTATGGTACGGGAA 212
Query 182 ATTCACACCGATCCAACGGTCCGTAATCGTCGACTTCATCCGCTCGCTCAACTCCAAAGA 241
||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct 213 ATTCACACCGATCCAACGGTCCGTAATCGTCGATTTCATCCACTCGCTAAACTCCAAAGA 272
Query 242 CGTTGCATCCTCCGCCGCAGTTCCTTCCGTCGCGTCGTGGTGGAAGACGACGGAGAAATA 301
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 273 CGTTGCATCTTCCGCCGCAGTTCCTTCCGTTGCTTCGTGGTGGAAGACGACGGAGAAATA 332
Query 302 CAAAGGCGGATCCTCAACACTCGTCGTCGGGAAACAGCTTCTCCTCGAGAACTATCCTCT 361
|||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 333 CAAAGGTGGCTCTTCAACACTCGTCGTCGGGAAACAGCTTCTACTCGAGAACTATCCTCT 392
Query 362 CGGAAAATCTCTAAAAAATCCTCACCTCCGTGCTTTATCCACAAAACTTAACGGCGGTCT 421
|||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 393 CGGAAAATCTCTCAAAAATCCTTACCTCCGTGCTTTATCCACCAAACTTAACGGCGGTCT 452
Query 422 CCGTTCCATAACCGTCGTTCTAACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 CCGTTCCATAACCGTCGTTCTAACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAG 512
Query 482 CCGGTGCGGCACTCACGGATCCTCCAGCTCGAAACCGCGTCGCGCAGCTAACGGCGCGGC 541
||||||||| ||||||||||||||| | ||||| || |||||||||||||||||||||||
Sbjct 513 CCGGTGCGGGACTCACGGATCCTCCGGTTCGAATCCCCGTCGCGCAGCTAACGGCGCGGC 572
Query 542 TTACGTCTGGGTCGGGAACTCCGAGACGCTGTGCCCTGGATATTGCGCCTGGCCATTTCA 601
|||||| |||||||||||||||||||||| |||||||||||||||||| ||||| |||||
Sbjct 573 TTACGTATGGGTCGGGAACTCCGAGACGCAGTGCCCTGGATATTGCGCGTGGCCGTTTCA 632
Query 602 CCAACCGATTTACGGACCACAAACGCCGCCATTAGTCGCGCCTAACGGTGACGTTGGAGT 661
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 633 CCAGCCGATTTACGGACCACAAACGCCGCCGTTAGTAGCGCCTAACGGTGACGTTGGAGT 692
Query 662 TGACGGAATGATTATAAACCTCGCCACACTTCTCGCTAACACCGTCACCAATCCGTTTAA 721
||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 693 TGACGGAATGATTATAAACCTTGCCACACTTCTAGCTAACACCGTGACGAATCCGTTTAA 752
Query 722 CAACGGATATTACCAAGGCCCACCAACTGCACCGCTTGAAGCTGTCTCCGCTTGTCCTGG 781
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 753 TAACGGATATTACCAAGGCCCACCAACTGCACCGCTTGAAGCTGTGTCTGCTTGTCCTGG 812
Query 782 CATATTCGGGTCGGGTTCTTACCCGGGTTACGCGGGTCGAGTACTTGTTGACAAAACAAC 841
||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 813 TATATTCGGGTCAGGTTCTTATCCGGGTTACGCGGGTCGGGTACTTGTTGACAAAACAAC 872
Query 842 CGGGTCTAGTTACAACGCTCGTGGACTCGCCGGTAGGAAATATCTATTGCCGGCGATGTG 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 CGGGTCTAGTTACAACGCTCGTGGACTCGCCGGTAGGAAATATCTATTGCCGGCGATGTG 932
Query 902 GGATCCGCAGAGTTTGACGTGTAAGACTCTGGTTTGATCTAAGGGATGTGAGTAAGAC 959
|||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 933 GGATCCGCAGAGTTCGACGTGCAAGACTCTGGTTTGATCCAAGGGATGTGAGTAAGAC 990
> AT5G09440.1 | Symbols: EXL4 | EXORDIUM like 4 | chr5:2938347-2939461
FORWARD LENGTH=1115
Length=1115
Score = 359 bits (194), Expect = 3e-98
Identities = 464/589 (79%), Gaps = 40/589 (7%)
Strand=Plus/Plus
Query 140 CTTGAAAGGTAACATCAC-CGTTAATCTCATCTGGTACGGGAAATTCACACCGATCCAAC 198
|||||| || ||||| || | |||||||||| |||||||| |||||||| || |||||||
Sbjct 143 CTTGAACGGAAACATTACTC-TTAATCTCATTTGGTACGGAAAATTCACCCCAATCCAAC 201
Query 199 GGTCCGTAATCGTCGACTTCATCCGCTCGCTCAACTCCAAAGACGT-TG-CATCCTCCGC 256
||||| |||||||||| |||||||||| || | | | || | || || || ||||
Sbjct 202 GGTCCATAATCGTCGATTTCATCCGCT--CT--A-T-C--AG--TTCTGTCA-CCGCCGC 250
Query 257 CGCAGTTCCTTCCGTCGCGTCGTGGTGGAAGACGACGGAGAAATACAAAGGCGGA-TCCT 315
| || ||| |||||||||||||||||||||||||||||||| |||||| ||| | |
Sbjct 251 CAAAGGTCCATCCGTCGCGTCGTGGTGGAAGACGACGGAGAAGTACAAAACCGGCGTT-T 309
Query 316 CAACACTCGTCGTCGGGAAACAGCTTCTCCTCGAGAACTATCCTCTCGGAAAATCTCTAA 375
|||| || || ||||| |||||||| ||||| ||||| || |||||||||||||| ||||
Sbjct 310 CAACTCTTGTTGTCGGTAAACAGCTCCTCCTTGAGAATTACCCTCTCGGAAAATCCCTAA 369
Query 376 AAAATCCTCACCTCCGTGCTTTATCCA-CAAAACTTAACG--GC-GGT-CTCCGTTCCAT 430
| | ||| |||| |||||| | || | |||| ||||||| | ||| ||| || | ||
Sbjct 370 AGAGCCCTTACCTTCGTGCTCTGTCAAGCAAA-CTTAACGCTGGTGGTGCTCGGT-CAAT 427
Query 431 AACCGTCGTTCT-AACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCG 489
||||||||| || |||||||||||| || ||||| || || ||||||||| ||| ||||
Sbjct 428 AACCGTCGT-CTTAACGGCGAAAGACGTCACCGTTGAGGGACTCTGTATGAACCGATGCG 486
Query 490 GCACTCACGGATCCTCCAGCTCGAAACCGCGTCGCGCAGCTAACGGCGCG-GCTTACGTC 548
| |||||||| || || || || | || || |||| | | | ||||||||
Sbjct 487 GGACTCACGGGTCAA--AG-TC-AA---GT-TC-CGT---TAACAGTG-GAGCTTACGTG 533
Query 549 TGGGTCGGGAACTCCGAGACGCTGTGCCCTGGATATTGCGCCTGGCCATTTCACCAACCG 608
|||||||| ||||| || |||| ||| ||||| || ||||| ||||| ||||| || ||
Sbjct 534 TGGGTCGGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGTTTCATCAGCCT 593
Query 609 ATTTACGGACCACAAACGCCGCCATTAGTCGCGCCTAACGGTGACGTTGGAGTTGACGGA 668
|| |||||||| || | ||||| |||||||| |||||||| ||||| ||||||||||||
Sbjct 594 ATCTACGGACCTCAGTCTCCGCCGTTAGTCGCACCTAACGGCGACGTCGGAGTTGACGGA 653
Query 669 ATGATTATAAACCTCGCCACACTTCTCGCTAACACCGTCACCAATCCGT 717
|||||||||||| |||| || ||||| | ||||||||| || |||||||
Sbjct 654 ATGATTATAAACATCGCGACTCTTCTTGTTAACACCGTAACGAATCCGT 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5