BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951256
Length=1696
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64280.1 | Symbols: DiT2.2 | dicarboxylate transporter 2.2 |... 2608 0.0
> AT5G64280.1 | Symbols: DiT2.2 | dicarboxylate transporter 2.2
| chr5:25711069-25713473 REVERSE LENGTH=1973
Length=1973
Score = 2608 bits (1412), Expect = 0.0
Identities = 1605/1695 (95%), Gaps = 25/1695 (1%)
Strand=Plus/Plus
Query 1 ACACACACTCTCTCCCGGCGATGGAGAGTTTGGCTCTCCGTTCGCTCTCACTCTCCACTT 60
|||||| ||||||||||| |||||||||||||||||| | || | ||| ||| ||
Sbjct 44 ACACACTCTCTCTCCCGG-GATGGAGAGTTTGGCTCT-C---CG-T-TCAATCT-CA--- 92
Query 61 CTTCATCAGCCTCCTATCTCTCTCTCCGCCGATCTTCCTCCAAATCATTCT-CGTTACTT 119
| || |||||||||||||| ||||||| |||||||||||||||||||| | ||||||||
Sbjct 93 C-TC-TCAGCCTCCTATCTATCTCTCCATCGATCTTCCTCCAAATCATT-TGCGTTACTT 149
Query 120 CCACCGTCGATTTCCGTACACTCATCCCCAACACTCCGATCACTCTCCATCTCCTCCCCT 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 150 CCACCGTCGATTTCCGTACACACATCCCCAACACTCCGATCACTCTCCATCTCTTCCCCT 209
Query 180 CGATTCACTCTACGCGCCACCGCCTCTTCCTCGCCGGA-GAA-ACCTC-TA--TC--CCT 232
||||||||||||||||||||||||||||||| |||||| ||| | | | || ||
Sbjct 210 CGATTCACTCTACGCGCCACCGCCTCTTCCTTGCCGGAGGAACAAAACAAACCTCAACC- 268
Query 233 TCCTTCTCCTTCTCCGCCGCAGCCGCAAGGAGCAAAGCTAATTCCTCTCACAATCTCCAT 292
||| |||||||||||||||||||||||||||| ||||||||||||||| | |||||| |
Sbjct 269 TCCCCCTCCTTCTCCGCCGCAGCCGCAAGGAGCGAAGCTAATTCCTCTCGCGATCTCCGT 328
Query 293 CTCAATCGGCCTCATCGTCAGATTCTTAATCCCAAGACCAGAACAAGTAACATCACAAGG 352
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 329 CTCAATCGGCCTCATAGTCAGATTCTTAATCCCAAGACCAGAACAAGTAACCTCACAAGG 388
Query 353 ATGGCAATTACTCTCAATCTTCCTCTTCACGATCTCAGGTCTCGTCCTTGGTCCTCTTCC 412
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 389 ATGGCAATTACTCTCAATCTTCCTCTTCACCATCTCAGGTCTCGTCCTTGGTCCTC-TCC 447
Query 413 C-GTAGGCGCTTGGGCTTTCATTGGCTTAACCGCTTCTATCGTCACCAAAACGCTTCCTT 471
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 448 CTGTAGGCGCTTGGGCTTTCATTGGCTTAACCGCTTCAATCGTCACCAAAACGCTTCCTT 507
Query 472 TCTCAACCGCTTTCGCCGCTTTTACCAATGAGCTCATTTGGCTAATCGCTATTTCTTTCT 531
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 508 TCTCAACCGCTTTCGCCGCTTTTACCAATGAGCTCATTTGGTTAATCGCTATTTCTTTCT 567
Query 532 TCTTCGCTCGTGGTTTCATTAAAACTGGTCTTGGCGATAGAATCGCTACTTATTTCGTGA 591
||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 568 TCTTCGCTCGTGGATTCATCAAAACTGGTCTTGGCGACAGAATCGCTACTTATTTCGTCA 627
Query 592 AATGGATTGGGAAAAGCACTCTTGGTCTGTCTTATGGTCTTGCGTTCTGTGAAACGCTTA 651
| ||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 628 AGTGGCTGGGGAAAAGCACTCTTGGTCTCTCTTATGGTCTTGCGTTCTGTGAAACGCTTA 687
Query 652 TGGGTTTGATTATGCCGTCTACAATGGCTAGAGCCGGTGGCGTTTTCTTGCCGGTGATCA 711
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 688 TGGGTTTGATTATGCCGTCTACCATGGCTAGAGCCGGTGGCGTTTTCTTGCCGGTGATTA 747
Query 712 AATCTTTGGCTATTTCCGCCGGAAGTTATCCCGGAGACCCATCTTCCAGAAAATTGGGTT 771
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 AATCTTTGGCGATCTCCGCCGGAAGTTATCCCGGAGACCCATCTTCCAGAAAATTGGGTT 807
Query 772 CTTTTCTGATACAAACCCAATTGCAGTGTTCAGGAGCTTCTGGTGCGATTCTACTCACAT 831
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 CTTTTCTCATTCAAACTCAATTGCAGTGTTCAGGAGCTTCTGGTGCGATTCTACTCACAT 867
Query 832 CAGCGGCACAAAACTTGCTATGTCTCAAACTAGCTAGAGAAGTTGGTGTTGTAATCTCGA 891
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 868 CAGCTGCACAAAACTTGCTATGTCTCAAACTAGCAAGAGAAGTTGGTGTTGTAATCTCGA 927
Query 892 ATCCATGGATCACTTGGTTTAAAGTCGCGAGTGTTCCTGCGTTTGTGTCTCTTCTTTGTA 951
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 928 ATCCATGGATCACTTGGTTTAAAGTCGCTAGTGTTCCTGCGTTTGTGTCTCTTCTTTGTA 987
Query 952 CTCCTCTCATTATCTACAAGCTTTACCCTCCTGACCTGAAACACACACCAGAAGCTCCGG 1011
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 988 CTCCTCTCATTATCTACAAGCTTTACCCTCCTGAGTTGAAACACACACCAGAAGCTCCGG 1047
Query 1012 CTGCAGCTGCTAAGAAGCTCGAGCGATTAGGTCCCATCACGAAAAACGAATGGATCATGC 1071
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1048 CTGCAGCTGCTAAGAAGCTCGAACGATTAGGTCCCATCACGAAAAACGAATGGATCATGC 1107
Query 1072 TCGGCGCCATGGCTTTCACTGTCTCTCTTTGGGTTTTCGGAGAGGCAATAGGAATAGCAA 1131
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 TCGGCGCTATGGCTTTCACCGTCTCTCTTTGGGTTTTCGGAGAGGCAATAGGAATAGCAA 1167
Query 1132 GTGTTGTGTCCGCGATGATAGGTCTGTCAACTCTTCTGCTGTTAGGAGTCATAAACTGGG 1191
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1168 GTGTTGTGTCCGCGATGATAGGTCTATCAACACTTCTGCTGTTGGGAGTCATAAACTGGG 1227
Query 1192 ACGATTGTCTCAGTGACAAATCAGCTTGGGACTCGCTCACTTGGTTTGCGGTTTTAATTG 1251
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1228 ACGATTGTCTCAGTGACAAATCAGCTTGGGACTCTCTCACTTGGTTTGCGGTTTTGATTG 1287
Query 1252 GTATGGCTGGACAGCTAACAAACCTCGGTGTTGTTGCTTGGATGTCGGATTGTGTGGCCA 1311
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1288 GTATGGCTGGACAGCTAACAAACCTCGGTGTCGTTGCTTGGATGTCGGATTGTGTGGCCA 1347
Query 1312 AACTGCTACAATCTCTCTCCCTGACTTGGCCCGCATCATTCATTATTCTCCAGGCTTGTT 1371
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1348 AACTGCTACAATCTCTCTCCCTGACTTGGCCCGCGTCATTCATTATTCTCCAGGCTTGTT 1407
Query 1372 ATCTCTTGATCCATTATCTATTTGCGAGCCAAACCGCTCACGCGGGAGCTCTCTATCCCC 1431
|||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 1408 ATCTCTTGATACATTATCTATTTGCAAGCCAAACCGGTCACGCGGGAGCTCTCTATCCGC 1467
Query 1432 CTTTCTTGGCGATGCAAATCGCTGCTGGAGTGCCGGGGGTTCTAGCAGCGCTTTGCTTGG 1491
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1468 CTTTCTTGGCGATGCAAATCGCTGCTGGCGTGCCTGGGGTTCTAGCAGCGCTTTGCTTGG 1527
Query 1492 CTTTCAACAACAATCTCTCGGGTGCTTTGGCACATTATAGTGGGGGACCAGCTGCTTTAT 1551
||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1528 CTTTCAACAACAATCTCTCTGGTGCTTTGGCACATTATAGTGGTGGACCGGCTGCTTTAT 1587
Query 1552 ATTACGGAGCTGGGTTTGTAGATCTGAGAGATATGTTTAGAGTCGGGTTCGTGATGGCTC 1611
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 ATTACGGAGCTGGGTATGTAGATCTGAGAGATATGTTTAGAGTCGGGTTCGTGATGGCTC 1647
Query 1612 TTGTACAAGCGATCATCTGGGGAGGTGTTGGATCTTTCTGGTGGAAATTATTGGGTCTCT 1671
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1648 TTGTACAAGCGATCATCTGGGGAGGTGTTGGATCTTTCTGGTGGAAATTTTTGGGTCTCT 1707
Query 1672 ACTGAAAATATAGAA 1686
|||||| ||||||||
Sbjct 1708 ACTGAACATATAGAA 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83834910150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5