BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951273 Length=322 Score E Sequences producing significant alignments: (Bits) Value AT5G36290.1 | Symbols: | Uncharacterized protein family (UPF00... 294 3e-79 > AT5G36290.1 | Symbols: | Uncharacterized protein family (UPF0016) | chr5:14302739-14305176 FORWARD LENGTH=1224 Length=1224 Score = 294 bits (159), Expect = 3e-79 Identities = 205/227 (90%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 95 CCATCGGGGCAACTATTGGACAAACGCGTTGTGTACTTCACCAGCGGTTGTTGGAGGAAG 154 |||| ||||||| ||||||||| || | |||||||||||| ||| |||||||||||||| Sbjct 863 CCATTGGGGCAAGTATTGGACACAC-TG-TGTGTACTTCACTAGCAGTTGTTGGAGGAAG 920 Query 155 CATGCTGGCTTTAAGGATCTCACAACGGACGGTTGCAACTGTTGGAGGCTTGCTCTTCTT 214 ||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| |||||| | Sbjct 921 CATGCTGGCTTCAAGGATCTCGCAACGTACGGTCGCAACTGTTGGAGGCTTACTCTTCCT 980 Query 215 CGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTACAGTCAATGCGCTTCTTTCGAAA 274 |||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| Sbjct 981 CGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTGTAGTAAATGTGCTTCTTTCGAAA 1040 Query 275 ATGGGTGTTGGAGACATTTTGTAAGTAAAGTTTCAATTTTGtttttt 321 ||||||||| |||||| ||| ||||||||||||||||||| |||||| Sbjct 1041 ATGGGTGTTAGAGACAATTTCTAAGTAAAGTTTCAATTTT-TTTTTT 1086 Score = 117 bits (63), Expect = 7e-26 Identities = 77/84 (92%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 1 GTTTAAGAGAAGCTCAAGTCATGCCAAGGGAAGACAGCCTTCCGTCGCTTATTCTCAAGA 60 ||| ||||||||||| ||||| | |||||||||||| |||||||||| |||||||||||| Sbjct 688 GTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGA 747 Query 61 TTTTGTACCCCAATATTTCTAGAG 84 |||||||||||||||||||| ||| Sbjct 748 TTTTGTACCCCAATATTTCTGGAG 771 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14979789202 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5