BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951273

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G36290.1 | Symbols:  | Uncharacterized protein family (UPF00...   294    3e-79


> AT5G36290.1 | Symbols:  | Uncharacterized protein family (UPF0016) 
| chr5:14302739-14305176 FORWARD LENGTH=1224
Length=1224

 Score =  294 bits (159),  Expect = 3e-79
 Identities = 205/227 (90%), Gaps = 3/227 (1%)
 Strand=Plus/Plus

Query  95    CCATCGGGGCAACTATTGGACAAACGCGTTGTGTACTTCACCAGCGGTTGTTGGAGGAAG  154
             |||| ||||||| ||||||||| ||  | |||||||||||| ||| ||||||||||||||
Sbjct  863   CCATTGGGGCAAGTATTGGACACAC-TG-TGTGTACTTCACTAGCAGTTGTTGGAGGAAG  920

Query  155   CATGCTGGCTTTAAGGATCTCACAACGGACGGTTGCAACTGTTGGAGGCTTGCTCTTCTT  214
             ||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| |||||| |
Sbjct  921   CATGCTGGCTTCAAGGATCTCGCAACGTACGGTCGCAACTGTTGGAGGCTTACTCTTCCT  980

Query  215   CGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTACAGTCAATGCGCTTCTTTCGAAA  274
             ||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||||||
Sbjct  981   CGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTGTAGTAAATGTGCTTCTTTCGAAA  1040

Query  275   ATGGGTGTTGGAGACATTTTGTAAGTAAAGTTTCAATTTTGtttttt  321
             ||||||||| |||||| ||| ||||||||||||||||||| ||||||
Sbjct  1041  ATGGGTGTTAGAGACAATTTCTAAGTAAAGTTTCAATTTT-TTTTTT  1086


 Score =  117 bits (63),  Expect = 7e-26
 Identities = 77/84 (92%), Gaps = 0/84 (0%)
 Strand=Plus/Plus

Query  1    GTTTAAGAGAAGCTCAAGTCATGCCAAGGGAAGACAGCCTTCCGTCGCTTATTCTCAAGA  60
            ||| ||||||||||| ||||| | |||||||||||| |||||||||| ||||||||||||
Sbjct  688  GTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGA  747

Query  61   TTTTGTACCCCAATATTTCTAGAG  84
            |||||||||||||||||||| |||
Sbjct  748  TTTTGTACCCCAATATTTCTGGAG  771



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14979789202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5