BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951280

Length=1289
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64490.1 | Symbols:  | ARM repeat superfamily protein | chr5...   226    4e-58


> AT5G64490.1 | Symbols:  | ARM repeat superfamily protein | chr5:25779310-25780308 
REVERSE LENGTH=999
Length=999

 Score =  226 bits (122),  Expect = 4e-58
 Identities = 151/165 (92%), Gaps = 2/165 (1%)
 Strand=Plus/Plus

Query  1123  ACTTTGGAATTCGCGAAAGAACGTAGGGTTGATTTGTTTCGTGAGCTCGTTGAGAAGCTG  1182
             |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  692   ACTTTGGAATTCGCGAAAGAACGTAGGGTTGATTTGTTTCGTGATCTCGTCGAGAAGCTG  751

Query  1183  AAGCCTTTGATTGATCTCTTGCGTGGATATCAAGGAA-TAAACATTGCGGCCATCATCGA  1241
             | ||||||| ||||||| |||||||||| |||||||| ||| |||||| |||||||||||
Sbjct  752   ACGCCTTTGCTTGATCTATTGCGTGGATCTCAAGGAAATAA-CATTGCCGCCATCATCGA  810

Query  1242  CTTAGACAAAATTGAGGGTGTGGATTAAAGTCTTTATGCTGTTGC  1286
             ||||||||||| ||||| |  ||||| ||||||||||||||||||
Sbjct  811   CTTAGACAAAAGTGAGGTTAAGGATTCAAGTCTTTATGCTGTTGC  855



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 63403288335


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5