BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951281
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64500.1 | Symbols: | Major facilitator superfamily protein... 2475 0.0
> AT5G64500.1 | Symbols: | Major facilitator superfamily protein
| chr5:25780382-25783654 FORWARD LENGTH=1764
Length=1764
Score = 2475 bits (1340), Expect = 0.0
Identities = 1446/1498 (97%), Gaps = 3/1498 (0%)
Strand=Plus/Plus
Query 1 TCTCAG-AAACCGAGCTTGCCATGGATGTTGACGGAGAAGGTGATCGTGGTCAAAACCCT 59
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 TCTCAGAAAACCGAGCTTGCCATGGATGTTGACGGAGAAGGTGATCGTGGTCAAAACCCT 168
Query 60 AGAATTATGGAGAGGGATTCAGATTCGACCAAAGATCAGATCACAGAGCCTTCATGGTTT 119
||||||||||||||||| |||||||| | |||||||| |||| |||||||||||||||||
Sbjct 169 AGAATTATGGAGAGGGACTCAGATTCTATCAAAGATCCGATCTCAGAGCCTTCATGGTTT 228
Query 120 ACCCCAAAAAAGCTTCTCTTTGTGTTTTGTGTTGTGAACTTGATAAATTATATAGATCGA 179
||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 229 ACCCCCAAAAAGCTTCTCTTTGTGTTTTGTGTTGTCAACTTAATCAATTATATAGATCGA 288
Query 180 GGAGCTATAGCAAGTAATGGTATCAATGGGAGTCGTGGTACTTGCACTTCGAGTGGTACA 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 289 GGAGCTATAGCAAGTAATGGTATCAATGGGAGTCGTGGTTCTTGCACTTCGAGTGGTACA 348
Query 240 TGTTCAGCTGGCAGCGGAATACAGGGGGATTTCAACTTGAGCAATTTTGAAGATGGAGTT 299
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 349 TGTTCATCTGGCAGCGGAATACAGGGAGATTTCAACTTGAGCAATTTTGAAGATGGAGTT 408
Query 300 CTGTCTTCTGCTTTCATGGTTGGGCTTCTTGTAGCCTCTCCTATATTTGCTTCATTAGCA 359
||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 409 CTGTCATCTGCTTTCATGGTTGGGCTTCTTGTTGCCTCTCCTATATTTGCTTCCTTAGCT 468
Query 360 AAGAGTGTTAATCCGTTTAGACTTATTGGAGTTGGATTGTCAATCTGGACTTTCGCTGTG 419
|||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 469 AAGAGTGTTAATCCGTTTAGACTTATCGGAGTTGGGTTGTCAATCTGGACTCTCGCTGTG 528
Query 420 ATTGGCTGCGGTCTTTCGTTTGATTTTTGGTCCATCACTATCTGTCGCATGTTTGTTGGT 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 529 ATTGGCTGCGGTCTTTCGTTTGATTTTTGGTCCATCACAATCTGTCGCATGTTTGTTGGT 588
Query 480 GTTGGTGAGGCATCATTTGTAAGTCTTGCTGCCCCATTTATCGACGATAATGCCCCACGT 539
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 589 GTTGGTGAGGCATCATTTGTAAGTCTTGCTGCCCCATTCATCGACGATAATGCCCCACAT 648
Query 540 GATCAGAAATCAGCGTGGCTTGCTGTATTCTACATGTGCATTCCGACAGGCTATGCTTTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GATCAGAAATCAGCGTGGCTTGCTGTATTCTACATGTGCATTCCGACAGGCTATGCTTTT 708
Query 600 GGCTATGTATATGGTGGAGTGATGGGGAGTGTCCTTCCTTGGCGGGCTGCATTTTGGGGA 659
||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 709 GGCTACGTATATGGTGGAGTGGTGGGGAGTGTCCTTCCTTGGCGTGCAGCATTTTGGGGA 768
Query 660 GAAGCAATACTTATGCTTCCTTTTGCTGTTCTAGGTTTTGTTATCAAACCCTTGCATTTG 719
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 769 GAAGCAATACTTATGCTTCCTTTTGCTGTTCTAGGTTTTGTCATCAAACCCTTGCATCTG 828
Query 720 AAAGGTTTCGCTCCAGATGATACAGGAAAAACCCGGACAGATAACTTAAACGTTTTGCCA 779
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 829 AAAGGTTTTGCTCCAGATGATACAGGAAAGCCCCGGACAGATAACTTAAACGTTTTGCCA 888
Query 780 ATTGGTTATGGGTTCTCAGCTGTTATGAAAGATTTGAAATTGCTTTTGGTAGATAAGGTT 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GTTGGTTATGGGTTCTCAGCTGTTATGAAAGATTTGAAATTGCTTTTGGTAGATAAGGTT 948
Query 840 TATGTTACAAACATTCTTGGGTATATTGCTTACAACTTTGTTTTAGGCGCATATTCATAT 899
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 949 TATGTTACAAACATTCTTGGGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATAT 1008
Query 900 TGGGGGCCAAAGGCTGGCTATAACATATACAAGATGGAAAACGCTGATATGATATTTGGA 959
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TGGGGACCAAAGGCTGGTTATAACATATACAAGATGGAAAACGCTGATATGATATTTGGA 1068
Query 960 GGGGTCACAGTTATATGCGGAATCGTTGGCACACTATCAGGAGGAGTGATTCTAGATTAC 1019
|||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1069 GGGGTCACAGTTGTATGCGGAATTGTTGGCACATTATCAGGAGGAGTGATTCTAGATTAC 1128
Query 1020 ATGGATGCTACAATTTCAAATGCTTTTAAGGTTCTTTCAGTTTCAACGTTTATAGGAGCA 1079
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 ATGGATGCCACAATTTCAAATGCTTTTAAGGTTCTTTCAGTTTCAACGTTTATAGGAGCA 1188
Query 1080 TTATTTTGCTTTGCTGCTTTCTGTTTCAAGAGCATGTATGCATTTCTAGCTCTTTTTGCT 1139
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1189 ATATTTTGCTTTGCTGCTTTCTGTTTCAAGAGCATGTATGCATTTTTAGCTCTTTTTGCT 1248
Query 1140 GTTGGTGAACTTCTTGTCTTTGCCACACAGGGTCCTGTGAATTTCATAGTTCTCCATTGT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GTTGGTGAACTTCTTGTCTTTGCCACACAGGGTCCTGTGAATTTCATAGTTCTCCATTGT 1308
Query 1200 GTCAAACCAAGTTTGAGACCACTTGCAATGGCGATGTCTACTGTATCCATCCATATCTTT 1259
|||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1309 GTCAAACCAAGTCTGAGACCACTTGCAATGGCGATGTCTACTGTCTCTATCCATATCTTT 1368
Query 1260 GGAGATGTACCTTCCTCACCACTTGTTGGAGTTCTTCAGGACTACGTGAACAATTGGAGA 1319
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1369 GGAGATGTACCTTCCTCACCACTCGTTGGAGTTCTTCAGGACTACGTGAACAATTGGAGA 1428
Query 1320 GTGACTTCTCTTGTTCTTACATTCGTTCTCTTCCCAGCTGCTGCAATTTGGTCCATAGGG 1379
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1429 GTGACTTCTCTTGTTCTTACATTCGTTCTCTTTCCAGCTGCTGCAATTTGGTCCATAGGG 1488
Query 1380 ATTTTCCTGAATAGTGTGGATCGATATAACGAAGATTCCGAGCCTGATGCAGTGACCAGA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1489 ATTTTCCTGAATAGTGTGGATCGATATAACGAAGATTCCGAGCCTGATGCAGTAACCAGA 1548
Query 1440 GAATCAACCGCTGCGCCTCTTCTCCAGGAAGCATGAGACAAAAAC-CTCCAA-GGTCA 1495
|||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 1549 GAATCAACCGCTGCGCCTCTTCTCCAGGAAGCATGAGACAAAAAAACTCAAAAGGTCA 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73744600605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5