BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951294
Length=580
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64620.1 | Symbols: C/VIF2, ATC/VIF2 | cell wall / vacuolar ... 920 0.0
> AT5G64620.1 | Symbols: C/VIF2, ATC/VIF2 | cell wall / vacuolar
inhibitor of fructosidase 2 | chr5:25831834-25832502 FORWARD
LENGTH=669
Length=669
Score = 920 bits (498), Expect = 0.0
Identities = 554/581 (95%), Gaps = 3/581 (1%)
Strand=Plus/Plus
Query 1 CTCAAAACCTTCTTCTTGAGATGGCTACTTCTCTCATCTTCCTCCTCCTCGTTACCCTAA 60
||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 22 CTCAAAACCTTCTTCCTGAAATGGCTTCTTCTCTCATCTTCCTCCTCCTCGTTACCCTAA 81
Query 61 CCTTTTCAGCATCAACCCTAATCTCAGCCAAATCC-A-AC-ACAACAATAATCGAATCAA 117
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 82 CCTTTTCAGCATCAACCCTAATCTCAGCCAAATCCAACACAACAACAATAATCGAATCAA 141
Query 118 CTTGCAAAACCACAAACTACTACAAATTCTGCGTCTCAGCTCTCAAATCCGACCCAAGAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CTTGCAAAACCACAAACTACTACAAATTCTGCGTCTCAGCTCTCAAATCCGACCCAAGAA 201
Query 178 GTCCCACAGCCGACACAAAAGGTCTAGCCGCCATTATGGTCGGCGTTGGTATGACAAACG 237
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 202 GTCCCACAGCCGACACAAAAGGTCTCGCCTCCATTATGGTCGGCGTTGGTATGACAAACG 261
Query 238 CCACCTCCACCGCAACTTACCTCGCCGGGAACCTATCCGCCACCGTAAATGACACCGTCC 297
||||||||||||||| |||| |||| || |||||||||||||||||||| |||||||| |
Sbjct 262 CCACCTCCACCGCAAATTACATCGCTGGAAACCTATCCGCCACCGTAAAAGACACCGTTC 321
Query 298 TTAAAAAGGTCTTACAAGATTGCTCCGAGAAGTATGCTCTCGCCGCTGATTCTCTCCGGC 357
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 TCAAAAAGGTCTTACAAGATTGCTCCGAGAAGTATGCTCTCGCCGCTGATTCTCTCCGGC 381
Query 358 TAACAATCCAAGATCTTGATAACGAAGCTTATGACTACGCTTCCATGCATGTGTTGGCGG 417
| || || |||||||||||| | |||||||||||||| || |||||||||||||||||||
Sbjct 382 TGACGATTCAAGATCTTGATGATGAAGCTTATGACTATGCCTCCATGCATGTGTTGGCGG 441
Query 418 CGCAGGATTATCCTAATGTTTGCCGGAATATGTTTAGGCGAGTTAAAGGGTTGGCTTATC 477
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 442 CGCAGGATTATCCTAATGTTTGCCGGAATATTTTTAGGCGGGTTAAAGGGTTGGCTTATC 501
Query 478 CGGTGGAGATTCGCCGGCGTGAAGCGAGTCTGAGACGTATATGCGGTGTTGTCTCCGGGA 537
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 502 CGGTGGAGATTCGCCGGCGTGAAGCTAGTCTGAGACGTATTTGTGGTGTTGTCTCCGGGA 561
Query 538 TTCTTGATCGCCTTGTTGAATGATTTACATTTGCATTAACT 578
|||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TTCTTGATCGCCTTGTTGAATGATTTACATTTGCATTAACT 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27879951585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5