BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951297
Length=1851
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64640.1 | Symbols: | Plant invertase/pectin methylesterase... 2983 0.0
> AT5G64640.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:25836727-25839199 FORWARD LENGTH=2048
Length=2048
Score = 2983 bits (1615), Expect = 0.0
Identities = 1777/1856 (96%), Gaps = 7/1856 (0%)
Strand=Plus/Plus
Query 1 AAATAtc-t-tctctccctccaatggattctccgaaactcccgtactctctctccgcctc 58
||||||| | ||||||||||||||||||||||||| ||| ||| ||||| ||||||||||
Sbjct 72 AAATATCTTCTCTCTCCCTCCAATGGATTCTCCGACACTACCGCACTCTATCTCCGCCTC 131
Query 59 ttcctccACCCCATTCGCTTCCGCCGCCGTAAAACCTCACCGGAATAAACTCCTTTCCCG 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 TTCCTCCACCCCATTCGCTTCCGCCGCCGTAAAACCTCACCGGAATAAACTCCTTTCCCG 191
Query 119 TAATGGCATCCTCATCATCATCGCCGTGTCCTGTATTCTCCTCCTCCTCATATCTCTCCT 178
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 192 TAATGGCATCCTCATCATCATCGCCGCGTCCTGTATTCTCCTCCTCCTCATATCTCTCCT 251
Query 179 CATCTACGCCACCGTCTCAAAATCCTCCCGCAGCCACCGTAATCCATCGCACCAAACCCC 238
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 252 CATCTACGCCACCGTCTCAAAATCCTCCCGCAACCACCATAATCCATCGCACCAAACCCC 311
Query 239 AACCTCCGACGATCATCCTCCGCCGGAAACACCTCCTTCTCCTCCTCCAATTGCTCAGAT 298
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 312 AACCTCCGACGATCATCCTCCGCCGGAAACACCTCCTTCTCCTCCACCAATCGCTCAGAT 371
Query 299 CCGTCTCGCATGTAACGCAACGCGTTTCCCAGACCATTGCGTTGCCTCGCTCTCTAAACC 358
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 372 CCGTCTCGCATGCAACGCAACGCGTTTCCCAGATCATTGCGTTGCCTCGCTCTCTAAACC 431
Query 359 GGGTCAAGTCCCTCCGGATCCTAAACCGGTCCAAATAATCCACTCTGCAATTTCAGTCTC 418
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 432 CGGTCAAGTCCCTCCGGATCCTAAACCGGTTCAAATAATCCACTCTGCAATTTCAGTCTC 491
Query 419 CTTCGAGAATCTCAAATCCGGCCAATCAAAAATCAAATCAATCCTAGACTCCTCCGCAGG 478
|| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 492 CTACGAGAATCTCAAATCCGGCCAATCGAAAATCCAATCAATCCTAGACTCCTCCGCAGG 551
Query 479 GAATAAAAACCGTACGAACATCGCCACCATTTGCCTCGAGATCCTCTCTTACTCTCAACA 538
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GAATCGAAACCGTACGAACATCGCCACCATTTGCCTCGAGATCCTCTCTTACTCTCAACA 611
Query 539 CCGTACCGAATCAACGGACATCGCCGTGACGAGCGGCGAAATCAAAGACGCTCGTGCTTG 598
||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||
Sbjct 612 CCGTACCGAATCAACAGACATAGCCGTGACGAGCGGCGATATCAAAGACGCACGTGCGTG 671
Query 599 GATGAGCGCAGCTCTAGCTTACCAATTCGATTGCTGGTCAGGTCTCAAAACCGTCAACGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 GATGAGCGCAGCTCTAGCTTACCAATTCGATTGCTGGTCAGGTCTCAAAACCGTCAACGA 731
Query 659 CACGAAGCAAGTCGTCGACACGATCACGTTCTTCGAAGATCTCGTGAACCTCACCGGAAA 718
||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 732 CACTAAGCAAGTCGTCGACACGATTACGTTCTTCGAAGGTCTCGTGAACCTCACCGGAAA 791
Query 719 CGCGTTGAGCATGATGTTATCGTTCGATAATTTTGGAGACGACGTCGTTTCGTGGATTCG 778
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 792 CGCGTTGAGCATGATGTTATCGTTCGACAGTTTCGGAGACGACGTCGTTTCGTGGATTCG 851
Query 779 TCCAGCGACGGAAAGAGATGGGTTTTGGGAAAAAGCTGGGCCGAGTTTGGGCTCGGGTAC 838
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 852 TCCAGCGACGGAAAGAGACGGGTTTTGGGAGAAAGCTGGGCCGAGTTTGGGCTCGGGTAC 911
Query 839 GGGTACAGAGGCTAATTTGGGTTTTCCGTCTGGTTTAACGGAAGACGTGACGGTGTGTAA 898
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GGGTACAGAGGCTAGTTTGGGTTTTCCGTCTGGTTTAACGGAAGACGTGACGGTGTGTAA 971
Query 899 AAACGGAGGGAAAGCGTGTAATTACAAAACGGTGCAAGAAGCCGTTGACGCAGCGCCGGA 958
|||||||||||||| ||||| |||||||| ||||||||||||||||| | ||||||||
Sbjct 972 AAACGGAGGGAAAGATTGTAAATACAAAACAGTGCAAGAAGCCGTTGATTCCGCGCCGGA 1031
Query 959 TACTAACGGAACCGTTAAGTTTGTGATACGGATTAAAGAAGGTGTGTATGAGGAAACCGT 1018
||| ||| |||| || |||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 1032 TACAAACAGAACTGTAAAGTTTGTGATACGTATTAGAGAAGGTGTGTATGAAGAAACCGT 1091
Query 1019 TAGGGTTCCGTTTGAGAAAAAGAACGTCGTCTTCATCGGTGACGGAATGGGCAAAACGGT 1078
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1092 TAGGGTTCCGTTTGAGAAAAAGAATGTCGTCTTCATCGGTGACGGAATGGGTAAAACGGT 1151
Query 1079 AATTACAGGGTCGTTGAATGTTGGACAACCAGGGATGACAACGTTT-AACTCTGCAACTG 1137
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1152 AATTACAGGGTCGTTGAATGTTGGACAACCAGGGATGACAACGTTTGAA-TCTGCAACTG 1210
Query 1138 TCGGAGTTCTCGGTGATGGATTTATGGCTCGTGATTTAACCATAGAGAACACAGCAGGAG 1197
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1211 TCGGAGTTCTCGGTGATGGATTTATGGCTCGTGATTTAACTATAGAGAACACGGCAGGAG 1270
Query 1198 CAGATGCGCACCAAGCGGTTGCGTTTAGATCAGACAGTGATTTCTCGATACTCGAAAACT 1257
||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 1271 CAGATGCGCACCAAGCGGTTGCGTTTAGATCAGACAGTGATTTTTCGGTACTTGAAAACT 1330
Query 1258 GTGAGTTTCTTGGGAATCAAGACACTGTTTATGCTCACTCTCTCCGTCAGTTCTACAAAC 1317
| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1331 GCGAGTTTCTTGGGAACCAAGACACTCTTTATGCTCACTCTCTCCGTCAGTTCTACAAAC 1390
Query 1318 AATGTCGAATCCAAGGCAACGTAGACTTCATCTTTGGTAACTCAGCTGCCGTATTCCAAG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 AATGTCGAATCCAAGGCAACGTAGACTTCATCTTTGGTAACTCAGCTGCCGTATTCCAAG 1450
Query 1378 ACTGTGATATCCTAATCGCTTCAAAAAATTCCAAACTCGAGCAAGGCGGTGCAAACAACG 1437
| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1451 ATTGTGATATCCTAATCGCTTCAAAACACTCCAAACTCGAGCAAGGCGGTGCAAACAACG 1510
Query 1438 CGATCACAGCACACGGTAGGATTGATGCGTCGCAGTCCACGGGATTTGTGTTTTTGAACT 1497
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 CGATCACAGCACACGGGAGGATTGATGCGTCGCAGTCCACGGGATTTGTGTTTTTGAACT 1570
Query 1498 GTTCGATTAACGGAACAGAGGAATACATGAAGGAGTTTCAAGCTAACCCTAAAGGGCATA 1557
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1571 GTTCGATTAACGGAACAGAGGAATACATGAAGGAGTTTCAAGCTAACCCTGAAGGGCATA 1630
Query 1558 AGAACTTCTTGGGGAGACCATGGAAGGAGTTTTCGAGGACGGTTTTTGTAAACTGTAATC 1617
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 AGAACTTCTTGGGAAGACCGTGGAAGGAGTTTTCGAGGACGGTTTTTGTAAACTGTAATC 1690
Query 1618 TAGAGTCTTTAATTAGTCCTGATGGATGGATGCCTTGGAGCGGGGATTTCGCATTGAAGA 1677
| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1691 TTGAGTCTTTGATTAGTCCTGATGGATGGATGCCTTGGAACGGGGATTTCGCATTGAAGA 1750
Query 1678 CTTTGTATTACGGTGAGTACAAGAATAAGGGTCCGGGATCGGTTAGAACGAATAGGGTTC 1737
||||||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 1751 CTTTGTATTACGGTGAGTATAAGAATACGGGTCCGGGATCGGTTAGATCGAGTAGGGTTC 1810
Query 1738 CATGGAGTAGTGAGATACCAGAGAAGCATGTTGATGTTTACTCTGTGGCCAATTTTATTC 1797
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1811 CATGGAGTAGTGAGATACCAGAGAAGCATGTTGATGTTTACTCTGTTGCCAATTTTATTC 1870
Query 1798 AGGCTGATGAGTGGGCTTCCACGACTGCTTGATTTT-GTGAAGGAAA-ATTGAGGT 1851
|||||||||||||||||||||||||||||||||||| || ||||||| || |||||
Sbjct 1871 AGGCTGATGAGTGGGCTTCCACGACTGCTTGATTTTTGTAAAGGAAACAT-GAGGT 1925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91615994625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5