BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951304

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38800.1 | Symbols: ATMTN1, ATMTAN1, MTN1, MTAN1 | methylthi...  67.6    6e-11


> AT4G38800.1 | Symbols: ATMTN1, ATMTAN1, MTN1, MTAN1 | methylthioadenosine 
nucleosidase 1 | chr4:18113161-18115133 REVERSE 
LENGTH=1135
Length=1135

 Score = 67.6 bits (36),  Expect = 6e-11
 Identities = 53/60 (88%), Gaps = 5/60 (8%)
 Strand=Plus/Plus

Query  23   TGACATCG-AGAAACCTGAGGT---TGTTCAATCGGAGATTCTTCGACCGATCTCCACAG  78
            |||||||| || ||||||||||   || |||||||||||||||||||||||||||| |||
Sbjct  164  TGACATCGAAG-AACCTGAGGTCGATGCTCAATCGGAGATTCTTCGACCGATCTCCTCAG  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14074969720


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5