BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951307
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64700.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1764 0.0
> AT5G64700.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr5:25865172-25866927 REVERSE LENGTH=1180
Length=1180
Score = 1764 bits (955), Expect = 0.0
Identities = 1064/1118 (95%), Gaps = 1/1118 (0%)
Strand=Plus/Plus
Query 1 AAACATCATCAAATCGATCGATGGACATGGAGTCaaaaaaaCCATATATGATGGTTACTA 60
|||||||||||||||| | ||||||||||||||| || ||||||||| ||||||||||||
Sbjct 63 AAACATCATCAAATCGGTAGATGGACATGGAGTCGAAGAAACCATATCTGATGGTTACTA 122
Query 61 TAATACAAGTCATATATACAATCATGTTCTTGATCTCTAAAGCCGTCTTCAATGGTGGAA 120
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 123 TAATACAAGTCATATATACAATCATGTTCTTGATCTCCAAAGCCGTCTTCAACGGTGGAA 182
Query 121 TGAACACTTTCGTCTTCGTTTTCTATCGTCAAGCTTTCGCTACCATCTTCTTGGCTCCTC 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TGAACACTTTCGTCTTTGTTTTCTATCGTCAAGCTTTCGCTACCATCTTCTTGGCTCCTC 242
Query 181 TGGCTTTCTTCTTTGAGCGGAAAAGTGCTCCACCTCTTTCATTTGTGACCTTCATCAAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TGGCTTTCTTCTTTGAGCGGAAAAGTGCTCCACCTCTTTCATTTGTGACCTTCATCAAGA 302
Query 241 TCTTCATGCTCTCTTTATTTGGTGTGACATTGAGCTTAGACTTAAACGGTATCGCATTAT 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 303 TCTTCATGCTCTCTTTATTTGGTGTGACATTGAGCTTGGACTTAAACGGTATCGCATTAT 362
Query 301 CATACACGTCGGCGACTTTAGCCGCGGCCACAACAGCTTCCCTTCCTGCCATCACATTCT 360
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 363 CATACACGTCGGCAACTTTAGCCGCCGCCACAACAGCTTCCCTTCCGGCCATCACATTCT 422
Query 361 TCTTGGCTCTCTTATTTGGAATGGAGAGGCTTAAGGTTAAGAGCATACAAGGAACAGCAA 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TCTTGGCTCTTTTATTTGGAATGGAGAGGCTTAAGGTTAAGAGCATACAAGGAACAGCAA 482
Query 421 AGCTTGTGGGGATTACTGTGTGCATGGGAGGGGTAATTACCTTAGCTCTTTACAAAGGTC 480
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 483 AGCTTGTGGGGATTACTGTGTGCATGGGAGGGGTAATTATCTTAGCTATTTACAAAGGTC 542
Query 481 CACTACTGAAAGTACCTTTATGTCCTCATTTCTATCATGGCCAAGAGCATCCTCACCATA 540
|| |||||||| |||||||||| |||||||| || || |||||||| |||||||||| |
Sbjct 543 CATTACTGAAATTACCTTTATGCCCTCATTTTTACCACGGCCAAGAACATCCTCACCGGA 602
Query 541 ATAATCCCGGCCACGTCTCCGGCGGTTCCACCTCGTGGCTCAAAGGATGTGTCCCCATGA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 603 ATAATCCCGGCCACGTCTCCGGCGGTTCCACCTCGTGGCTCAAAGGATGTGTCCTCATGA 662
Query 601 TCACCTCCAACATTTTATGGGGTCTCTGGCTCGTTTTACAGGGTCGTGTGTTGAAGGTTT 660
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TAACCTCCAACATTCTATGGGGTCTCTGGCTCGTTTTACAGGGTCGTGTGTTGAAGGTTT 722
Query 661 ACCCTTCGAAGCTATACTTCACAACTCTTCATTGTCTATTGAGTTCGATTCAATCCTTCG 720
| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 723 ATCCTTCGAAGCTATATTTCACAACTCTTCATTGTCTATTGAGTTCCATTCAATCATTCG 782
Query 721 TCATCGCGATTGTTTTAGAGAGAGATATTTCAGCTTGGAAGCTTGGTTGGAACCTAAGAC 780
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 783 TCATCGCGATTGCTTTAGAGAGAGATATTTCAGCATGGAAGCTTGGTTGGAACCTAAGAC 842
Query 781 TCATTGCAGTCATTTACTGTGGATTCATAGTAACAGGCGTAGCATATTATTTGCAATCAT 840
|| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 843 TCGTTGCAGTCATTTACTGCGGATTCATTGTAACAGGCGTAGCATATTATTTGCAATCAT 902
Query 841 GGGTTATAGAAAAGAGAGGACCTGTCTTCTTATCAATGTTCACTCCTTTGTCTCTCCTTT 900
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 903 GGGTTATAGAAAAGAGAGGACCTGTCTTCTTATCAATGTTTACTCCTTTGTCTCTCCTCT 962
Query 901 TCACTCTTCTCTCTTCAGCGATTCTCTTGTGCGAGATCATCAGTCTTGGAAGTATTGTAG 960
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TCACTCTCCTCTCTTCAGCGATTCTCTTGTGCGAGATCATCAGTCTTGGAAGTATTGTAG 1022
Query 961 GTGGATTGTTGTTGATTATAGGACTCTACTGTGTGTTGTGGGGGAAAAGCAAAGAGGAGA 1020
||||||| || ||||| |||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct 1023 GTGGATTATTATTGATCATAGGACTTTACTGTGTGCTGTGGGGGAAAAGCAGAGAGGAGA 1082
Query 1021 AAAACAGTGGCGATGATAAGACTGATCTACAGAAGGAAAATGATGTCGTGTGCAATGAAG 1080
|||||||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 1083 AAAACAGTGGTGATGATAAGATTGATTTACAGAAGGAAAACGATGTCGTGTGCAATGAAG 1142
Query 1081 TGAAGGTCGTCGTTAGTTGAAAGAATGTGTTAATTTTT 1118
||||||| ||| ||||||||| ||||||||| |||||
Sbjct 1143 TGAAGGTTGTCATTAGTTGAAT-AATGTGTTATTTTTT 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54969596775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5